Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23250

Experiment: 4C survival; 1152 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23245 and AO356_23250 are separated by 138 nucleotidesAO356_23250 and AO356_23255 are separated by 201 nucleotidesAO356_23255 and AO356_23260 overlap by 4 nucleotidesAO356_23260 and AO356_23265 overlap by 4 nucleotides AO356_23245: AO356_23245 - ABC transporter substrate-binding protein, at 5,202,262 to 5,203,272 _23245 AO356_23250: AO356_23250 - hypothetical protein, at 5,203,411 to 5,203,848 _23250 AO356_23255: AO356_23255 - cation:proton antiporter, at 5,204,050 to 5,204,412 _23255 AO356_23260: AO356_23260 - cation:proton antiporter, at 5,204,409 to 5,204,687 _23260 AO356_23265: AO356_23265 - cation:proton antiporter, at 5,204,684 to 5,205,172 _23265 Position (kb) 5203 5204Strain fitness (log2 ratio) -1 0 1 2at 5202.441 kb on + strand, within AO356_23245at 5202.441 kb on + strand, within AO356_23245at 5202.442 kb on - strand, within AO356_23245at 5202.494 kb on + strand, within AO356_23245at 5202.494 kb on + strand, within AO356_23245at 5202.494 kb on + strand, within AO356_23245at 5202.494 kb on + strand, within AO356_23245at 5202.494 kb on + strand, within AO356_23245at 5202.494 kb on + strand, within AO356_23245at 5202.495 kb on - strand, within AO356_23245at 5202.495 kb on - strand, within AO356_23245at 5202.495 kb on - strand, within AO356_23245at 5202.495 kb on - strand, within AO356_23245at 5202.620 kb on - strand, within AO356_23245at 5202.620 kb on - strand, within AO356_23245at 5202.620 kb on - strand, within AO356_23245at 5202.697 kb on + strand, within AO356_23245at 5202.802 kb on + strand, within AO356_23245at 5202.803 kb on - strand, within AO356_23245at 5202.820 kb on + strand, within AO356_23245at 5202.820 kb on + strand, within AO356_23245at 5202.820 kb on + strand, within AO356_23245at 5202.821 kb on - strand, within AO356_23245at 5202.904 kb on + strand, within AO356_23245at 5202.904 kb on + strand, within AO356_23245at 5202.904 kb on + strand, within AO356_23245at 5202.904 kb on + strand, within AO356_23245at 5202.905 kb on - strand, within AO356_23245at 5202.905 kb on - strand, within AO356_23245at 5202.905 kb on - strand, within AO356_23245at 5202.905 kb on - strand, within AO356_23245at 5202.907 kb on + strand, within AO356_23245at 5202.907 kb on + strand, within AO356_23245at 5202.908 kb on - strand, within AO356_23245at 5203.270 kb on + strandat 5203.270 kb on + strandat 5203.375 kb on - strandat 5203.375 kb on - strandat 5203.375 kb on - strandat 5203.422 kb on - strandat 5203.422 kb on - strandat 5203.474 kb on + strand, within AO356_23250at 5203.474 kb on + strand, within AO356_23250at 5203.475 kb on - strand, within AO356_23250at 5203.792 kb on + strand, within AO356_23250at 5203.875 kb on + strandat 5203.875 kb on + strandat 5203.876 kb on - strandat 5203.876 kb on - strandat 5203.876 kb on - strandat 5203.876 kb on - strandat 5204.045 kb on - strandat 5204.500 kb on + strand, within AO356_23260at 5204.501 kb on - strand, within AO356_23260at 5204.501 kb on - strand, within AO356_23260at 5204.501 kb on - strand, within AO356_23260at 5204.516 kb on - strand, within AO356_23260at 5204.557 kb on + strand, within AO356_23260at 5204.557 kb on + strand, within AO356_23260at 5204.558 kb on - strand, within AO356_23260at 5204.558 kb on - strand, within AO356_23260at 5204.558 kb on - strand, within AO356_23260at 5204.558 kb on - strand, within AO356_23260at 5204.558 kb on - strand, within AO356_23260at 5204.563 kb on + strand, within AO356_23260at 5204.563 kb on + strand, within AO356_23260at 5204.563 kb on + strand, within AO356_23260at 5204.563 kb on + strand, within AO356_23260at 5204.563 kb on + strand, within AO356_23260at 5204.564 kb on - strand, within AO356_23260at 5204.564 kb on - strand, within AO356_23260at 5204.715 kb on + strandat 5204.715 kb on + strandat 5204.716 kb on - strandat 5204.716 kb on - strandat 5204.716 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs
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5,202,441 + AO356_23245 0.18 -0.3
5,202,441 + AO356_23245 0.18 +1.1
5,202,442 - AO356_23245 0.18 -0.5
5,202,494 + AO356_23245 0.23 +0.6
5,202,494 + AO356_23245 0.23 +1.1
5,202,494 + AO356_23245 0.23 -1.0
5,202,494 + AO356_23245 0.23 -0.2
5,202,494 + AO356_23245 0.23 +0.6
5,202,494 + AO356_23245 0.23 -0.1
5,202,495 - AO356_23245 0.23 +1.5
5,202,495 - AO356_23245 0.23 +0.7
5,202,495 - AO356_23245 0.23 -0.3
5,202,495 - AO356_23245 0.23 +1.2
5,202,620 - AO356_23245 0.35 +0.5
5,202,620 - AO356_23245 0.35 +0.1
5,202,620 - AO356_23245 0.35 -1.3
5,202,697 + AO356_23245 0.43 +0.0
5,202,802 + AO356_23245 0.53 +0.7
5,202,803 - AO356_23245 0.54 +0.9
5,202,820 + AO356_23245 0.55 +0.3
5,202,820 + AO356_23245 0.55 +0.3
5,202,820 + AO356_23245 0.55 +1.3
5,202,821 - AO356_23245 0.55 +0.6
5,202,904 + AO356_23245 0.64 +2.1
5,202,904 + AO356_23245 0.64 +0.5
5,202,904 + AO356_23245 0.64 +0.8
5,202,904 + AO356_23245 0.64 +0.1
5,202,905 - AO356_23245 0.64 -0.2
5,202,905 - AO356_23245 0.64 +0.2
5,202,905 - AO356_23245 0.64 +1.6
5,202,905 - AO356_23245 0.64 +1.4
5,202,907 + AO356_23245 0.64 +0.2
5,202,907 + AO356_23245 0.64 -0.2
5,202,908 - AO356_23245 0.64 +0.8
5,203,270 + -0.1
5,203,270 + +0.2
5,203,375 - +0.6
5,203,375 - -0.2
5,203,375 - +1.1
5,203,422 - +1.2
5,203,422 - -0.2
5,203,474 + AO356_23250 0.14 +0.5
5,203,474 + AO356_23250 0.14 -0.7
5,203,475 - AO356_23250 0.15 +0.0
5,203,792 + AO356_23250 0.87 +0.4
5,203,875 + +0.6
5,203,875 + -0.0
5,203,876 - +0.4
5,203,876 - -0.5
5,203,876 - -0.7
5,203,876 - -0.0
5,204,045 - -0.0
5,204,500 + AO356_23260 0.33 +0.5
5,204,501 - AO356_23260 0.33 -0.4
5,204,501 - AO356_23260 0.33 +0.9
5,204,501 - AO356_23260 0.33 -0.5
5,204,516 - AO356_23260 0.38 -0.1
5,204,557 + AO356_23260 0.53 -0.5
5,204,557 + AO356_23260 0.53 +0.2
5,204,558 - AO356_23260 0.53 -0.1
5,204,558 - AO356_23260 0.53 +0.7
5,204,558 - AO356_23260 0.53 +0.2
5,204,558 - AO356_23260 0.53 +0.6
5,204,558 - AO356_23260 0.53 +0.6
5,204,563 + AO356_23260 0.55 +0.4
5,204,563 + AO356_23260 0.55 +2.4
5,204,563 + AO356_23260 0.55 -1.2
5,204,563 + AO356_23260 0.55 +1.0
5,204,563 + AO356_23260 0.55 -0.7
5,204,564 - AO356_23260 0.56 -0.1
5,204,564 - AO356_23260 0.56 +0.2
5,204,715 + +1.0
5,204,715 + +0.7
5,204,716 - -0.7
5,204,716 - -0.6
5,204,716 - +1.0

Or see this region's nucleotide sequence