Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22080

Experiment: 4C survival; 1152 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22075 and AO356_22080 are separated by 108 nucleotidesAO356_22080 and AO356_22085 are separated by 456 nucleotides AO356_22075: AO356_22075 - chemotaxis protein, at 4,940,762 to 4,942,684 _22075 AO356_22080: AO356_22080 - isocitrate lyase, at 4,942,793 to 4,944,118 _22080 AO356_22085: AO356_22085 - secretin, at 4,944,575 to 4,945,336 _22085 Position (kb) 4942 4943 4944 4945Strain fitness (log2 ratio) -2 -1 0 1at 4941.812 kb on - strand, within AO356_22075at 4941.812 kb on - strand, within AO356_22075at 4941.960 kb on + strand, within AO356_22075at 4941.961 kb on - strand, within AO356_22075at 4941.961 kb on - strand, within AO356_22075at 4942.316 kb on - strand, within AO356_22075at 4942.316 kb on - strand, within AO356_22075at 4942.578 kb on + strandat 4942.579 kb on - strandat 4942.579 kb on - strandat 4942.683 kb on - strandat 4942.743 kb on + strandat 4942.750 kb on + strandat 4942.881 kb on + strandat 4942.920 kb on + strandat 4942.920 kb on + strandat 4942.920 kb on + strandat 4942.966 kb on - strand, within AO356_22080at 4942.989 kb on + strand, within AO356_22080at 4943.061 kb on + strand, within AO356_22080at 4943.061 kb on + strand, within AO356_22080at 4943.061 kb on + strand, within AO356_22080at 4943.062 kb on - strand, within AO356_22080at 4943.148 kb on + strand, within AO356_22080at 4943.148 kb on + strand, within AO356_22080at 4943.148 kb on + strand, within AO356_22080at 4943.148 kb on + strand, within AO356_22080at 4943.148 kb on + strand, within AO356_22080at 4943.307 kb on + strand, within AO356_22080at 4943.307 kb on + strand, within AO356_22080at 4943.307 kb on + strand, within AO356_22080at 4943.307 kb on + strand, within AO356_22080at 4943.307 kb on + strand, within AO356_22080at 4943.307 kb on + strand, within AO356_22080at 4943.307 kb on + strand, within AO356_22080at 4943.308 kb on - strand, within AO356_22080at 4943.308 kb on - strand, within AO356_22080at 4943.308 kb on - strand, within AO356_22080at 4943.308 kb on - strand, within AO356_22080at 4943.352 kb on + strand, within AO356_22080at 4943.656 kb on - strand, within AO356_22080at 4943.656 kb on - strand, within AO356_22080at 4943.656 kb on - strand, within AO356_22080at 4943.779 kb on - strand, within AO356_22080at 4943.779 kb on - strand, within AO356_22080at 4943.779 kb on - strand, within AO356_22080at 4943.829 kb on + strand, within AO356_22080at 4943.829 kb on + strand, within AO356_22080at 4943.829 kb on + strand, within AO356_22080at 4943.830 kb on - strand, within AO356_22080at 4943.830 kb on - strand, within AO356_22080at 4943.830 kb on - strand, within AO356_22080at 4944.033 kb on + strandat 4944.034 kb on - strandat 4944.124 kb on + strandat 4944.124 kb on + strandat 4944.125 kb on - strandat 4944.125 kb on - strandat 4944.125 kb on - strandat 4944.139 kb on - strandat 4944.184 kb on + strandat 4944.288 kb on + strandat 4944.288 kb on + strandat 4944.288 kb on + strandat 4944.291 kb on + strandat 4944.292 kb on - strandat 4944.316 kb on - strandat 4944.316 kb on - strandat 4944.319 kb on + strandat 4944.319 kb on + strandat 4944.319 kb on + strandat 4944.319 kb on + strandat 4944.319 kb on + strandat 4944.319 kb on + strandat 4944.320 kb on - strandat 4944.320 kb on - strandat 4944.320 kb on - strandat 4944.320 kb on - strandat 4944.323 kb on + strandat 4944.323 kb on + strandat 4944.324 kb on - strandat 4944.324 kb on - strandat 4944.324 kb on - strandat 4944.415 kb on - strandat 4944.415 kb on - strandat 4944.415 kb on - strandat 4944.531 kb on + strandat 4944.531 kb on + strandat 4944.531 kb on + strandat 4944.531 kb on + strandat 4944.532 kb on - strandat 4944.544 kb on + strandat 4944.544 kb on + strandat 4944.547 kb on + strandat 4944.633 kb on + strandat 4944.633 kb on + strandat 4944.633 kb on + strandat 4944.634 kb on - strandat 4944.634 kb on - strandat 4944.634 kb on - strandat 4944.746 kb on + strand, within AO356_22085at 4944.747 kb on - strand, within AO356_22085at 4944.831 kb on + strand, within AO356_22085at 4944.831 kb on + strand, within AO356_22085at 4944.831 kb on + strand, within AO356_22085at 4944.832 kb on - strand, within AO356_22085at 4944.832 kb on - strand, within AO356_22085at 4944.882 kb on + strand, within AO356_22085at 4944.882 kb on + strand, within AO356_22085at 4944.882 kb on + strand, within AO356_22085at 4944.883 kb on - strand, within AO356_22085at 4944.883 kb on - strand, within AO356_22085at 4944.883 kb on - strand, within AO356_22085at 4944.901 kb on + strand, within AO356_22085at 4944.902 kb on - strand, within AO356_22085at 4944.923 kb on + strand, within AO356_22085at 4944.924 kb on - strand, within AO356_22085at 4944.968 kb on + strand, within AO356_22085at 4944.968 kb on + strand, within AO356_22085at 4944.969 kb on - strand, within AO356_22085at 4945.042 kb on - strand, within AO356_22085

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs
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4,941,812 - AO356_22075 0.55 +1.0
4,941,812 - AO356_22075 0.55 +0.8
4,941,960 + AO356_22075 0.62 +0.4
4,941,961 - AO356_22075 0.62 +1.1
4,941,961 - AO356_22075 0.62 -1.8
4,942,316 - AO356_22075 0.81 +0.6
4,942,316 - AO356_22075 0.81 -0.2
4,942,578 + +1.2
4,942,579 - -2.0
4,942,579 - -1.1
4,942,683 - -1.6
4,942,743 + +0.5
4,942,750 + +0.2
4,942,881 + +0.3
4,942,920 + +0.4
4,942,920 + +0.2
4,942,920 + -0.1
4,942,966 - AO356_22080 0.13 -0.1
4,942,989 + AO356_22080 0.15 +1.0
4,943,061 + AO356_22080 0.20 +0.6
4,943,061 + AO356_22080 0.20 -0.4
4,943,061 + AO356_22080 0.20 -0.8
4,943,062 - AO356_22080 0.20 +0.1
4,943,148 + AO356_22080 0.27 -1.2
4,943,148 + AO356_22080 0.27 -0.8
4,943,148 + AO356_22080 0.27 -0.0
4,943,148 + AO356_22080 0.27 +1.2
4,943,148 + AO356_22080 0.27 +0.4
4,943,307 + AO356_22080 0.39 +0.3
4,943,307 + AO356_22080 0.39 +0.5
4,943,307 + AO356_22080 0.39 -0.5
4,943,307 + AO356_22080 0.39 -0.5
4,943,307 + AO356_22080 0.39 +0.4
4,943,307 + AO356_22080 0.39 +0.2
4,943,307 + AO356_22080 0.39 +1.1
4,943,308 - AO356_22080 0.39 -1.1
4,943,308 - AO356_22080 0.39 +0.1
4,943,308 - AO356_22080 0.39 -0.6
4,943,308 - AO356_22080 0.39 +0.8
4,943,352 + AO356_22080 0.42 +0.7
4,943,656 - AO356_22080 0.65 -0.6
4,943,656 - AO356_22080 0.65 -0.3
4,943,656 - AO356_22080 0.65 +0.4
4,943,779 - AO356_22080 0.74 +0.8
4,943,779 - AO356_22080 0.74 +0.6
4,943,779 - AO356_22080 0.74 +0.9
4,943,829 + AO356_22080 0.78 -0.2
4,943,829 + AO356_22080 0.78 +0.7
4,943,829 + AO356_22080 0.78 +0.7
4,943,830 - AO356_22080 0.78 -0.7
4,943,830 - AO356_22080 0.78 +0.8
4,943,830 - AO356_22080 0.78 -1.2
4,944,033 + +0.2
4,944,034 - +0.3
4,944,124 + -1.2
4,944,124 + +0.6
4,944,125 - +0.2
4,944,125 - +0.4
4,944,125 - -0.1
4,944,139 - -0.3
4,944,184 + -0.4
4,944,288 + +0.5
4,944,288 + +0.3
4,944,288 + -0.3
4,944,291 + -0.4
4,944,292 - +0.4
4,944,316 - +0.5
4,944,316 - +0.1
4,944,319 + +0.1
4,944,319 + -0.1
4,944,319 + -0.9
4,944,319 + +0.8
4,944,319 + +0.7
4,944,319 + -0.3
4,944,320 - -0.3
4,944,320 - +0.8
4,944,320 - +0.3
4,944,320 - -1.4
4,944,323 + -0.6
4,944,323 + +0.1
4,944,324 - -0.5
4,944,324 - -1.2
4,944,324 - +0.3
4,944,415 - -1.9
4,944,415 - -0.8
4,944,415 - +1.0
4,944,531 + -0.4
4,944,531 + +0.1
4,944,531 + +0.3
4,944,531 + -0.3
4,944,532 - -0.6
4,944,544 + +0.2
4,944,544 + +0.5
4,944,547 + +0.9
4,944,633 + -0.2
4,944,633 + -1.0
4,944,633 + -0.1
4,944,634 - +0.1
4,944,634 - +0.2
4,944,634 - -0.6
4,944,746 + AO356_22085 0.22 -1.0
4,944,747 - AO356_22085 0.23 +0.9
4,944,831 + AO356_22085 0.34 -0.1
4,944,831 + AO356_22085 0.34 +0.7
4,944,831 + AO356_22085 0.34 -2.0
4,944,832 - AO356_22085 0.34 +1.0
4,944,832 - AO356_22085 0.34 -0.7
4,944,882 + AO356_22085 0.40 -0.0
4,944,882 + AO356_22085 0.40 +0.9
4,944,882 + AO356_22085 0.40 +0.3
4,944,883 - AO356_22085 0.40 +0.5
4,944,883 - AO356_22085 0.40 +1.1
4,944,883 - AO356_22085 0.40 -0.4
4,944,901 + AO356_22085 0.43 -0.9
4,944,902 - AO356_22085 0.43 -1.3
4,944,923 + AO356_22085 0.46 +0.6
4,944,924 - AO356_22085 0.46 -0.7
4,944,968 + AO356_22085 0.52 +0.2
4,944,968 + AO356_22085 0.52 +0.3
4,944,969 - AO356_22085 0.52 -0.4
4,945,042 - AO356_22085 0.61 +0.7

Or see this region's nucleotide sequence