Experiment: 4C survival; 1152 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18120 and AO356_18125 are separated by 250 nucleotides AO356_18125 and AO356_18130 are separated by 4 nucleotides AO356_18130 and AO356_18135 are separated by 41 nucleotides
AO356_18120: AO356_18120 - MFS transporter, at 4,083,166 to 4,084,353
_18120
AO356_18125: AO356_18125 - copper resistance protein CopD, at 4,084,604 to 4,085,515
_18125
AO356_18130: AO356_18130 - copper resistance protein CopC, at 4,085,520 to 4,085,897
_18130
AO356_18135: AO356_18135 - copper resistance protein CopB, at 4,085,939 to 4,086,841
_18135
Position (kb)
4084
4085
4086 Strain fitness (log2 ratio)
-2
-1
0
1 at 4084.384 kb on - strand at 4084.384 kb on - strand at 4084.384 kb on - strand at 4084.384 kb on - strand at 4084.402 kb on - strand at 4084.510 kb on + strand at 4084.590 kb on + strand at 4084.590 kb on + strand at 4084.590 kb on + strand at 4084.590 kb on + strand at 4084.590 kb on + strand at 4084.591 kb on - strand at 4084.591 kb on - strand at 4084.830 kb on + strand, within AO356_18125 at 4084.830 kb on + strand, within AO356_18125 at 4084.830 kb on + strand, within AO356_18125 at 4084.830 kb on + strand, within AO356_18125 at 4084.830 kb on + strand, within AO356_18125 at 4084.830 kb on + strand, within AO356_18125 at 4084.831 kb on - strand, within AO356_18125 at 4084.831 kb on - strand, within AO356_18125 at 4084.831 kb on - strand, within AO356_18125 at 4084.831 kb on - strand, within AO356_18125 at 4084.831 kb on - strand, within AO356_18125 at 4084.831 kb on - strand, within AO356_18125 at 4084.831 kb on - strand, within AO356_18125 at 4084.831 kb on - strand, within AO356_18125 at 4084.831 kb on - strand, within AO356_18125 at 4084.878 kb on + strand, within AO356_18125 at 4084.878 kb on + strand, within AO356_18125 at 4084.879 kb on - strand, within AO356_18125 at 4084.879 kb on - strand, within AO356_18125 at 4084.879 kb on - strand, within AO356_18125 at 4084.879 kb on - strand, within AO356_18125 at 4084.879 kb on - strand, within AO356_18125 at 4084.879 kb on - strand, within AO356_18125 at 4084.879 kb on - strand, within AO356_18125 at 4084.879 kb on - strand, within AO356_18125 at 4084.879 kb on - strand, within AO356_18125 at 4084.879 kb on - strand, within AO356_18125 at 4084.879 kb on - strand, within AO356_18125 at 4084.879 kb on - strand, within AO356_18125 at 4085.428 kb on + strand at 4085.428 kb on + strand at 4085.428 kb on + strand at 4085.428 kb on + strand at 4085.429 kb on - strand at 4085.429 kb on - strand at 4085.429 kb on - strand at 4085.429 kb on - strand at 4085.430 kb on + strand at 4085.430 kb on + strand at 4085.430 kb on + strand at 4085.430 kb on + strand at 4085.431 kb on - strand at 4085.431 kb on - strand at 4085.431 kb on - strand at 4085.475 kb on + strand at 4085.475 kb on + strand at 4085.475 kb on + strand at 4085.476 kb on - strand at 4085.476 kb on - strand at 4085.476 kb on - strand at 4085.476 kb on - strand at 4085.593 kb on + strand, within AO356_18130 at 4085.593 kb on + strand, within AO356_18130 at 4085.593 kb on + strand, within AO356_18130 at 4085.593 kb on + strand, within AO356_18130 at 4085.594 kb on - strand, within AO356_18130 at 4085.594 kb on - strand, within AO356_18130 at 4085.594 kb on - strand, within AO356_18130 at 4085.594 kb on - strand, within AO356_18130 at 4085.594 kb on - strand, within AO356_18130 at 4085.909 kb on + strand at 4085.910 kb on - strand at 4085.910 kb on - strand at 4085.921 kb on + strand at 4085.922 kb on - strand at 4085.927 kb on + strand at 4085.928 kb on - strand at 4086.051 kb on + strand, within AO356_18135 at 4086.051 kb on + strand, within AO356_18135 at 4086.051 kb on + strand, within AO356_18135 at 4086.051 kb on + strand, within AO356_18135 at 4086.052 kb on - strand, within AO356_18135 at 4086.052 kb on - strand, within AO356_18135 at 4086.071 kb on + strand, within AO356_18135 at 4086.072 kb on - strand, within AO356_18135 at 4086.151 kb on - strand, within AO356_18135 at 4086.151 kb on - strand, within AO356_18135 at 4086.151 kb on - strand, within AO356_18135 at 4086.151 kb on - strand, within AO356_18135 at 4086.207 kb on + strand, within AO356_18135 at 4086.207 kb on + strand, within AO356_18135 at 4086.207 kb on + strand, within AO356_18135 at 4086.207 kb on + strand, within AO356_18135 at 4086.208 kb on - strand, within AO356_18135 at 4086.208 kb on - strand, within AO356_18135 at 4086.208 kb on - strand, within AO356_18135 at 4086.208 kb on - strand, within AO356_18135 at 4086.279 kb on + strand, within AO356_18135 at 4086.279 kb on + strand, within AO356_18135 at 4086.280 kb on - strand, within AO356_18135 at 4086.280 kb on - strand, within AO356_18135
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs remove 4,084,384 - +0.8 4,084,384 - +1.0 4,084,384 - +0.6 4,084,384 - -1.7 4,084,402 - +0.5 4,084,510 + -0.7 4,084,590 + +0.8 4,084,590 + +0.2 4,084,590 + +0.0 4,084,590 + +0.5 4,084,590 + -0.4 4,084,591 - -0.6 4,084,591 - +0.5 4,084,830 + AO356_18125 0.25 +0.1 4,084,830 + AO356_18125 0.25 -0.6 4,084,830 + AO356_18125 0.25 -0.3 4,084,830 + AO356_18125 0.25 -1.1 4,084,830 + AO356_18125 0.25 -0.4 4,084,830 + AO356_18125 0.25 -0.2 4,084,831 - AO356_18125 0.25 -0.3 4,084,831 - AO356_18125 0.25 +0.6 4,084,831 - AO356_18125 0.25 +0.3 4,084,831 - AO356_18125 0.25 +0.1 4,084,831 - AO356_18125 0.25 -1.2 4,084,831 - AO356_18125 0.25 -0.8 4,084,831 - AO356_18125 0.25 +0.3 4,084,831 - AO356_18125 0.25 +0.5 4,084,831 - AO356_18125 0.25 -0.9 4,084,878 + AO356_18125 0.30 -1.2 4,084,878 + AO356_18125 0.30 -0.4 4,084,879 - AO356_18125 0.30 -0.4 4,084,879 - AO356_18125 0.30 -0.4 4,084,879 - AO356_18125 0.30 -1.3 4,084,879 - AO356_18125 0.30 +1.2 4,084,879 - AO356_18125 0.30 -0.0 4,084,879 - AO356_18125 0.30 -0.8 4,084,879 - AO356_18125 0.30 -0.3 4,084,879 - AO356_18125 0.30 +1.3 4,084,879 - AO356_18125 0.30 -0.3 4,084,879 - AO356_18125 0.30 -0.7 4,084,879 - AO356_18125 0.30 +0.9 4,084,879 - AO356_18125 0.30 +1.2 4,085,428 + +0.7 4,085,428 + +1.0 4,085,428 + +0.7 4,085,428 + +0.0 4,085,429 - -0.6 4,085,429 - +0.2 4,085,429 - +0.8 4,085,429 - +0.1 4,085,430 + -0.2 4,085,430 + +0.5 4,085,430 + +0.9 4,085,430 + +1.6 4,085,431 - +0.2 4,085,431 - +0.1 4,085,431 - -0.6 4,085,475 + -0.3 4,085,475 + +0.3 4,085,475 + -0.7 4,085,476 - -0.5 4,085,476 - -1.2 4,085,476 - -0.0 4,085,476 - +0.6 4,085,593 + AO356_18130 0.19 +0.6 4,085,593 + AO356_18130 0.19 -0.1 4,085,593 + AO356_18130 0.19 -0.8 4,085,593 + AO356_18130 0.19 -1.4 4,085,594 - AO356_18130 0.20 -0.8 4,085,594 - AO356_18130 0.20 +0.3 4,085,594 - AO356_18130 0.20 +0.2 4,085,594 - AO356_18130 0.20 -2.3 4,085,594 - AO356_18130 0.20 +0.5 4,085,909 + -0.1 4,085,910 - -0.5 4,085,910 - -0.3 4,085,921 + +0.3 4,085,922 - -0.9 4,085,927 + +0.6 4,085,928 - -0.0 4,086,051 + AO356_18135 0.12 +0.8 4,086,051 + AO356_18135 0.12 -0.8 4,086,051 + AO356_18135 0.12 -1.0 4,086,051 + AO356_18135 0.12 +0.1 4,086,052 - AO356_18135 0.13 +0.7 4,086,052 - AO356_18135 0.13 +1.6 4,086,071 + AO356_18135 0.15 +0.6 4,086,072 - AO356_18135 0.15 -0.4 4,086,151 - AO356_18135 0.23 -0.3 4,086,151 - AO356_18135 0.23 +0.4 4,086,151 - AO356_18135 0.23 -0.6 4,086,151 - AO356_18135 0.23 -0.3 4,086,207 + AO356_18135 0.30 +0.2 4,086,207 + AO356_18135 0.30 +0.5 4,086,207 + AO356_18135 0.30 +0.5 4,086,207 + AO356_18135 0.30 +0.6 4,086,208 - AO356_18135 0.30 -0.2 4,086,208 - AO356_18135 0.30 +1.3 4,086,208 - AO356_18135 0.30 +0.6 4,086,208 - AO356_18135 0.30 +0.2 4,086,279 + AO356_18135 0.38 +0.2 4,086,279 + AO356_18135 0.38 +1.5 4,086,280 - AO356_18135 0.38 +0.5 4,086,280 - AO356_18135 0.38 -1.3
Or see this region's nucleotide sequence