Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18125

Experiment: 4C survival; 1152 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18120 and AO356_18125 are separated by 250 nucleotidesAO356_18125 and AO356_18130 are separated by 4 nucleotidesAO356_18130 and AO356_18135 are separated by 41 nucleotides AO356_18120: AO356_18120 - MFS transporter, at 4,083,166 to 4,084,353 _18120 AO356_18125: AO356_18125 - copper resistance protein CopD, at 4,084,604 to 4,085,515 _18125 AO356_18130: AO356_18130 - copper resistance protein CopC, at 4,085,520 to 4,085,897 _18130 AO356_18135: AO356_18135 - copper resistance protein CopB, at 4,085,939 to 4,086,841 _18135 Position (kb) 4084 4085 4086Strain fitness (log2 ratio) -2 -1 0 1at 4084.384 kb on - strandat 4084.384 kb on - strandat 4084.384 kb on - strandat 4084.384 kb on - strandat 4084.402 kb on - strandat 4084.510 kb on + strandat 4084.590 kb on + strandat 4084.590 kb on + strandat 4084.590 kb on + strandat 4084.590 kb on + strandat 4084.590 kb on + strandat 4084.591 kb on - strandat 4084.591 kb on - strandat 4084.830 kb on + strand, within AO356_18125at 4084.830 kb on + strand, within AO356_18125at 4084.830 kb on + strand, within AO356_18125at 4084.830 kb on + strand, within AO356_18125at 4084.830 kb on + strand, within AO356_18125at 4084.830 kb on + strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.878 kb on + strand, within AO356_18125at 4084.878 kb on + strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4085.428 kb on + strandat 4085.428 kb on + strandat 4085.428 kb on + strandat 4085.428 kb on + strandat 4085.429 kb on - strandat 4085.429 kb on - strandat 4085.429 kb on - strandat 4085.429 kb on - strandat 4085.430 kb on + strandat 4085.430 kb on + strandat 4085.430 kb on + strandat 4085.430 kb on + strandat 4085.431 kb on - strandat 4085.431 kb on - strandat 4085.431 kb on - strandat 4085.475 kb on + strandat 4085.475 kb on + strandat 4085.475 kb on + strandat 4085.476 kb on - strandat 4085.476 kb on - strandat 4085.476 kb on - strandat 4085.476 kb on - strandat 4085.593 kb on + strand, within AO356_18130at 4085.593 kb on + strand, within AO356_18130at 4085.593 kb on + strand, within AO356_18130at 4085.593 kb on + strand, within AO356_18130at 4085.594 kb on - strand, within AO356_18130at 4085.594 kb on - strand, within AO356_18130at 4085.594 kb on - strand, within AO356_18130at 4085.594 kb on - strand, within AO356_18130at 4085.594 kb on - strand, within AO356_18130at 4085.909 kb on + strandat 4085.910 kb on - strandat 4085.910 kb on - strandat 4085.921 kb on + strandat 4085.922 kb on - strandat 4085.927 kb on + strandat 4085.928 kb on - strandat 4086.051 kb on + strand, within AO356_18135at 4086.051 kb on + strand, within AO356_18135at 4086.051 kb on + strand, within AO356_18135at 4086.051 kb on + strand, within AO356_18135at 4086.052 kb on - strand, within AO356_18135at 4086.052 kb on - strand, within AO356_18135at 4086.071 kb on + strand, within AO356_18135at 4086.072 kb on - strand, within AO356_18135at 4086.151 kb on - strand, within AO356_18135at 4086.151 kb on - strand, within AO356_18135at 4086.151 kb on - strand, within AO356_18135at 4086.151 kb on - strand, within AO356_18135at 4086.207 kb on + strand, within AO356_18135at 4086.207 kb on + strand, within AO356_18135at 4086.207 kb on + strand, within AO356_18135at 4086.207 kb on + strand, within AO356_18135at 4086.208 kb on - strand, within AO356_18135at 4086.208 kb on - strand, within AO356_18135at 4086.208 kb on - strand, within AO356_18135at 4086.208 kb on - strand, within AO356_18135at 4086.279 kb on + strand, within AO356_18135at 4086.279 kb on + strand, within AO356_18135at 4086.280 kb on - strand, within AO356_18135at 4086.280 kb on - strand, within AO356_18135

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs
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4,084,384 - +0.8
4,084,384 - +1.0
4,084,384 - +0.6
4,084,384 - -1.7
4,084,402 - +0.5
4,084,510 + -0.7
4,084,590 + +0.8
4,084,590 + +0.2
4,084,590 + +0.0
4,084,590 + +0.5
4,084,590 + -0.4
4,084,591 - -0.6
4,084,591 - +0.5
4,084,830 + AO356_18125 0.25 +0.1
4,084,830 + AO356_18125 0.25 -0.6
4,084,830 + AO356_18125 0.25 -0.3
4,084,830 + AO356_18125 0.25 -1.1
4,084,830 + AO356_18125 0.25 -0.4
4,084,830 + AO356_18125 0.25 -0.2
4,084,831 - AO356_18125 0.25 -0.3
4,084,831 - AO356_18125 0.25 +0.6
4,084,831 - AO356_18125 0.25 +0.3
4,084,831 - AO356_18125 0.25 +0.1
4,084,831 - AO356_18125 0.25 -1.2
4,084,831 - AO356_18125 0.25 -0.8
4,084,831 - AO356_18125 0.25 +0.3
4,084,831 - AO356_18125 0.25 +0.5
4,084,831 - AO356_18125 0.25 -0.9
4,084,878 + AO356_18125 0.30 -1.2
4,084,878 + AO356_18125 0.30 -0.4
4,084,879 - AO356_18125 0.30 -0.4
4,084,879 - AO356_18125 0.30 -0.4
4,084,879 - AO356_18125 0.30 -1.3
4,084,879 - AO356_18125 0.30 +1.2
4,084,879 - AO356_18125 0.30 -0.0
4,084,879 - AO356_18125 0.30 -0.8
4,084,879 - AO356_18125 0.30 -0.3
4,084,879 - AO356_18125 0.30 +1.3
4,084,879 - AO356_18125 0.30 -0.3
4,084,879 - AO356_18125 0.30 -0.7
4,084,879 - AO356_18125 0.30 +0.9
4,084,879 - AO356_18125 0.30 +1.2
4,085,428 + +0.7
4,085,428 + +1.0
4,085,428 + +0.7
4,085,428 + +0.0
4,085,429 - -0.6
4,085,429 - +0.2
4,085,429 - +0.8
4,085,429 - +0.1
4,085,430 + -0.2
4,085,430 + +0.5
4,085,430 + +0.9
4,085,430 + +1.6
4,085,431 - +0.2
4,085,431 - +0.1
4,085,431 - -0.6
4,085,475 + -0.3
4,085,475 + +0.3
4,085,475 + -0.7
4,085,476 - -0.5
4,085,476 - -1.2
4,085,476 - -0.0
4,085,476 - +0.6
4,085,593 + AO356_18130 0.19 +0.6
4,085,593 + AO356_18130 0.19 -0.1
4,085,593 + AO356_18130 0.19 -0.8
4,085,593 + AO356_18130 0.19 -1.4
4,085,594 - AO356_18130 0.20 -0.8
4,085,594 - AO356_18130 0.20 +0.3
4,085,594 - AO356_18130 0.20 +0.2
4,085,594 - AO356_18130 0.20 -2.3
4,085,594 - AO356_18130 0.20 +0.5
4,085,909 + -0.1
4,085,910 - -0.5
4,085,910 - -0.3
4,085,921 + +0.3
4,085,922 - -0.9
4,085,927 + +0.6
4,085,928 - -0.0
4,086,051 + AO356_18135 0.12 +0.8
4,086,051 + AO356_18135 0.12 -0.8
4,086,051 + AO356_18135 0.12 -1.0
4,086,051 + AO356_18135 0.12 +0.1
4,086,052 - AO356_18135 0.13 +0.7
4,086,052 - AO356_18135 0.13 +1.6
4,086,071 + AO356_18135 0.15 +0.6
4,086,072 - AO356_18135 0.15 -0.4
4,086,151 - AO356_18135 0.23 -0.3
4,086,151 - AO356_18135 0.23 +0.4
4,086,151 - AO356_18135 0.23 -0.6
4,086,151 - AO356_18135 0.23 -0.3
4,086,207 + AO356_18135 0.30 +0.2
4,086,207 + AO356_18135 0.30 +0.5
4,086,207 + AO356_18135 0.30 +0.5
4,086,207 + AO356_18135 0.30 +0.6
4,086,208 - AO356_18135 0.30 -0.2
4,086,208 - AO356_18135 0.30 +1.3
4,086,208 - AO356_18135 0.30 +0.6
4,086,208 - AO356_18135 0.30 +0.2
4,086,279 + AO356_18135 0.38 +0.2
4,086,279 + AO356_18135 0.38 +1.5
4,086,280 - AO356_18135 0.38 +0.5
4,086,280 - AO356_18135 0.38 -1.3

Or see this region's nucleotide sequence