Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15940

Experiment: 4C survival; 1152 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_15935 and AO356_15940 are separated by 299 nucleotidesAO356_15940 and AO356_15945 are separated by 7 nucleotidesAO356_15945 and AO356_15950 are separated by 5 nucleotidesAO356_15950 and AO356_15955 are separated by 93 nucleotidesAO356_15955 and AO356_15960 are separated by 146 nucleotides AO356_15935: AO356_15935 - ATP-dependent chaperone ClpB, at 3,607,377 to 3,609,941 _15935 AO356_15940: AO356_15940 - tRNA-Asn, at 3,610,241 to 3,610,316 _15940 AO356_15945: AO356_15945 - tRNA-Pro, at 3,610,324 to 3,610,400 _15945 AO356_15950: AO356_15950 - tRNA-Lys, at 3,610,406 to 3,610,481 _15950 AO356_15955: AO356_15955 - tRNA-Pro, at 3,610,575 to 3,610,651 _15955 AO356_15960: AO356_15960 - chemotaxis protein, at 3,610,798 to 3,612,423 _15960 Position (kb) 3610 3611Strain fitness (log2 ratio) -1 0 1 2 3at 3609.333 kb on + strand, within AO356_15935at 3609.334 kb on - strand, within AO356_15935at 3609.334 kb on - strand, within AO356_15935at 3609.334 kb on - strand, within AO356_15935at 3609.342 kb on + strand, within AO356_15935at 3609.357 kb on + strand, within AO356_15935at 3609.358 kb on - strand, within AO356_15935at 3609.358 kb on - strand, within AO356_15935at 3609.491 kb on + strand, within AO356_15935at 3609.491 kb on + strand, within AO356_15935at 3609.491 kb on + strand, within AO356_15935at 3609.492 kb on - strand, within AO356_15935at 3610.028 kb on + strandat 3610.028 kb on + strandat 3610.028 kb on + strandat 3610.028 kb on + strandat 3610.045 kb on + strandat 3610.089 kb on + strandat 3610.089 kb on + strandat 3610.089 kb on + strandat 3610.455 kb on + strand, within AO356_15950at 3610.581 kb on - strandat 3610.667 kb on + strandat 3610.678 kb on - strandat 3610.726 kb on + strandat 3610.780 kb on + strandat 3610.780 kb on + strandat 3610.780 kb on + strandat 3610.780 kb on + strandat 3610.780 kb on + strandat 3610.781 kb on - strandat 3610.797 kb on + strandat 3610.818 kb on + strandat 3610.818 kb on + strandat 3610.819 kb on - strandat 3610.819 kb on - strandat 3611.047 kb on + strand, within AO356_15960at 3611.047 kb on + strand, within AO356_15960at 3611.048 kb on - strand, within AO356_15960at 3611.140 kb on + strand, within AO356_15960at 3611.141 kb on - strand, within AO356_15960at 3611.141 kb on - strand, within AO356_15960at 3611.141 kb on - strand, within AO356_15960at 3611.141 kb on - strand, within AO356_15960

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs
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3,609,333 + AO356_15935 0.76 +1.4
3,609,334 - AO356_15935 0.76 +0.1
3,609,334 - AO356_15935 0.76 +0.9
3,609,334 - AO356_15935 0.76 -0.6
3,609,342 + AO356_15935 0.77 +0.1
3,609,357 + AO356_15935 0.77 +0.6
3,609,358 - AO356_15935 0.77 +0.6
3,609,358 - AO356_15935 0.77 -1.2
3,609,491 + AO356_15935 0.82 -0.0
3,609,491 + AO356_15935 0.82 +0.6
3,609,491 + AO356_15935 0.82 -0.1
3,609,492 - AO356_15935 0.82 -0.8
3,610,028 + -0.5
3,610,028 + -0.7
3,610,028 + +1.3
3,610,028 + +0.8
3,610,045 + -1.0
3,610,089 + +1.0
3,610,089 + -0.0
3,610,089 + +0.3
3,610,455 + AO356_15950 0.64 +0.3
3,610,581 - +0.4
3,610,667 + -1.3
3,610,678 - +0.0
3,610,726 + +0.9
3,610,780 + -1.2
3,610,780 + +0.2
3,610,780 + +0.6
3,610,780 + +0.4
3,610,780 + +0.1
3,610,781 - -1.2
3,610,797 + -0.1
3,610,818 + -0.1
3,610,818 + -0.0
3,610,819 - +0.8
3,610,819 - +0.4
3,611,047 + AO356_15960 0.15 +3.0
3,611,047 + AO356_15960 0.15 +0.5
3,611,048 - AO356_15960 0.15 +0.7
3,611,140 + AO356_15960 0.21 -1.0
3,611,141 - AO356_15960 0.21 +1.0
3,611,141 - AO356_15960 0.21 +0.4
3,611,141 - AO356_15960 0.21 +0.1
3,611,141 - AO356_15960 0.21 +0.5

Or see this region's nucleotide sequence