Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13365

Experiment: 4C survival; 1152 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13355 and AO356_13360 are separated by 197 nucleotidesAO356_13360 and AO356_13365 are separated by 73 nucleotidesAO356_13365 and AO356_13370 are separated by 90 nucleotidesAO356_13370 and AO356_13375 are separated by 54 nucleotides AO356_13355: AO356_13355 - RNA polymerase subunit sigma-70, at 3,034,716 to 3,035,570 _13355 AO356_13360: AO356_13360 - monofunctional biosynthetic peptidoglycan transglycosylase, at 3,035,768 to 3,036,490 _13360 AO356_13365: AO356_13365 - hypothetical protein, at 3,036,564 to 3,036,935 _13365 AO356_13370: AO356_13370 - thiamine biosynthesis protein ThiS, at 3,037,026 to 3,037,226 _13370 AO356_13375: AO356_13375 - thiazole synthase, at 3,037,281 to 3,038,075 _13375 Position (kb) 3036 3037Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3035.770 kb on - strandat 3035.814 kb on + strandat 3035.814 kb on + strandat 3035.814 kb on + strandat 3035.814 kb on + strandat 3035.814 kb on + strandat 3035.815 kb on - strandat 3035.815 kb on - strandat 3035.815 kb on - strandat 3035.874 kb on + strand, within AO356_13360at 3035.874 kb on + strand, within AO356_13360at 3035.875 kb on - strand, within AO356_13360at 3036.036 kb on + strand, within AO356_13360at 3036.036 kb on + strand, within AO356_13360at 3036.036 kb on + strand, within AO356_13360at 3036.037 kb on - strand, within AO356_13360at 3036.037 kb on - strand, within AO356_13360at 3036.460 kb on + strandat 3036.461 kb on - strandat 3036.479 kb on + strandat 3036.480 kb on - strandat 3036.490 kb on + strandat 3036.490 kb on + strandat 3036.490 kb on + strandat 3036.490 kb on + strandat 3036.490 kb on + strandat 3036.490 kb on + strandat 3036.491 kb on - strandat 3036.491 kb on - strandat 3036.491 kb on - strandat 3036.491 kb on - strandat 3036.491 kb on - strandat 3036.491 kb on - strandat 3036.491 kb on - strandat 3036.491 kb on - strandat 3036.526 kb on + strandat 3036.527 kb on - strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.528 kb on + strandat 3036.529 kb on - strandat 3036.529 kb on - strandat 3036.529 kb on - strandat 3036.529 kb on - strandat 3036.529 kb on - strandat 3036.529 kb on - strandat 3036.529 kb on - strandat 3036.529 kb on - strandat 3036.529 kb on - strandat 3036.572 kb on + strandat 3036.573 kb on - strandat 3036.573 kb on - strandat 3036.573 kb on - strandat 3036.605 kb on + strand, within AO356_13365at 3036.666 kb on + strand, within AO356_13365at 3036.667 kb on - strand, within AO356_13365at 3036.667 kb on - strand, within AO356_13365at 3036.696 kb on + strand, within AO356_13365at 3036.696 kb on + strand, within AO356_13365at 3036.696 kb on + strand, within AO356_13365at 3036.696 kb on + strand, within AO356_13365at 3036.696 kb on + strand, within AO356_13365at 3036.696 kb on + strand, within AO356_13365at 3036.697 kb on - strand, within AO356_13365at 3036.697 kb on - strand, within AO356_13365at 3036.822 kb on + strand, within AO356_13365at 3036.822 kb on + strand, within AO356_13365at 3036.822 kb on + strand, within AO356_13365at 3036.823 kb on - strand, within AO356_13365at 3036.823 kb on - strand, within AO356_13365at 3036.988 kb on + strandat 3036.988 kb on + strandat 3036.989 kb on - strandat 3036.989 kb on - strandat 3037.325 kb on + strandat 3037.325 kb on + strandat 3037.325 kb on + strandat 3037.325 kb on + strandat 3037.325 kb on + strandat 3037.326 kb on - strandat 3037.326 kb on - strandat 3037.329 kb on + strandat 3037.329 kb on + strandat 3037.329 kb on + strandat 3037.330 kb on - strandat 3037.330 kb on - strandat 3037.348 kb on + strandat 3037.348 kb on + strandat 3037.349 kb on - strandat 3037.363 kb on - strand, within AO356_13375at 3037.497 kb on + strand, within AO356_13375at 3037.698 kb on + strand, within AO356_13375at 3037.699 kb on - strand, within AO356_13375at 3037.699 kb on - strand, within AO356_13375at 3037.699 kb on - strand, within AO356_13375at 3037.699 kb on - strand, within AO356_13375at 3037.699 kb on - strand, within AO356_13375at 3037.699 kb on - strand, within AO356_13375at 3037.806 kb on + strand, within AO356_13375at 3037.807 kb on - strand, within AO356_13375at 3037.807 kb on - strand, within AO356_13375at 3037.807 kb on - strand, within AO356_13375

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs
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3,035,770 - +1.0
3,035,814 + +1.3
3,035,814 + -1.0
3,035,814 + -0.2
3,035,814 + +1.0
3,035,814 + +0.5
3,035,815 - -0.2
3,035,815 - -0.9
3,035,815 - +1.2
3,035,874 + AO356_13360 0.15 -0.0
3,035,874 + AO356_13360 0.15 +0.1
3,035,875 - AO356_13360 0.15 -1.2
3,036,036 + AO356_13360 0.37 +1.3
3,036,036 + AO356_13360 0.37 -0.8
3,036,036 + AO356_13360 0.37 +0.5
3,036,037 - AO356_13360 0.37 -0.1
3,036,037 - AO356_13360 0.37 +0.1
3,036,460 + -1.2
3,036,461 - -0.3
3,036,479 + +0.4
3,036,480 - -0.2
3,036,490 + -0.3
3,036,490 + +0.2
3,036,490 + +0.1
3,036,490 + +0.3
3,036,490 + +0.4
3,036,490 + +0.2
3,036,491 - -0.2
3,036,491 - +1.6
3,036,491 - +0.7
3,036,491 - +0.6
3,036,491 - +3.2
3,036,491 - +0.2
3,036,491 - +0.7
3,036,491 - -0.8
3,036,526 + +0.0
3,036,527 - -1.0
3,036,528 + +0.7
3,036,528 + +0.5
3,036,528 + +0.8
3,036,528 + +0.5
3,036,528 + +0.3
3,036,528 + -0.3
3,036,528 + +0.2
3,036,528 + +0.1
3,036,528 + -0.0
3,036,528 + -0.4
3,036,528 + -0.4
3,036,528 + +0.4
3,036,528 + -0.4
3,036,528 + +0.1
3,036,528 + +0.3
3,036,528 + +1.3
3,036,528 + -0.3
3,036,528 + +0.8
3,036,528 + +1.1
3,036,529 - +0.8
3,036,529 - +0.8
3,036,529 - -0.1
3,036,529 - -0.1
3,036,529 - -0.5
3,036,529 - -0.2
3,036,529 - -0.5
3,036,529 - +0.1
3,036,529 - -0.7
3,036,572 + -0.2
3,036,573 - +1.8
3,036,573 - +0.4
3,036,573 - -0.4
3,036,605 + AO356_13365 0.11 -1.4
3,036,666 + AO356_13365 0.27 +0.8
3,036,667 - AO356_13365 0.28 -0.5
3,036,667 - AO356_13365 0.28 -0.5
3,036,696 + AO356_13365 0.35 -0.2
3,036,696 + AO356_13365 0.35 +0.6
3,036,696 + AO356_13365 0.35 -0.2
3,036,696 + AO356_13365 0.35 +0.2
3,036,696 + AO356_13365 0.35 -0.4
3,036,696 + AO356_13365 0.35 -0.4
3,036,697 - AO356_13365 0.36 +0.5
3,036,697 - AO356_13365 0.36 +0.4
3,036,822 + AO356_13365 0.69 +1.0
3,036,822 + AO356_13365 0.69 -2.9
3,036,822 + AO356_13365 0.69 +1.1
3,036,823 - AO356_13365 0.70 +0.0
3,036,823 - AO356_13365 0.70 +0.0
3,036,988 + -0.7
3,036,988 + -0.3
3,036,989 - +1.0
3,036,989 - -0.9
3,037,325 + -0.1
3,037,325 + -1.1
3,037,325 + -0.5
3,037,325 + -0.5
3,037,325 + -0.9
3,037,326 - -0.8
3,037,326 - -0.9
3,037,329 + -0.3
3,037,329 + -1.6
3,037,329 + +1.0
3,037,330 - -1.4
3,037,330 - +0.8
3,037,348 + -0.7
3,037,348 + +0.0
3,037,349 - +0.9
3,037,363 - AO356_13375 0.10 +0.7
3,037,497 + AO356_13375 0.27 -0.3
3,037,698 + AO356_13375 0.52 -2.6
3,037,699 - AO356_13375 0.53 -0.5
3,037,699 - AO356_13375 0.53 +0.8
3,037,699 - AO356_13375 0.53 +0.7
3,037,699 - AO356_13375 0.53 -0.7
3,037,699 - AO356_13375 0.53 -0.7
3,037,699 - AO356_13375 0.53 -0.9
3,037,806 + AO356_13375 0.66 +0.9
3,037,807 - AO356_13375 0.66 +0.8
3,037,807 - AO356_13375 0.66 +0.5
3,037,807 - AO356_13375 0.66 +1.8

Or see this region's nucleotide sequence