Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_12500

Experiment: 4C survival; 1152 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_12495 and AO356_12500 are separated by 275 nucleotidesAO356_12500 and AO356_12505 are separated by 34 nucleotidesAO356_12505 and AO356_12510 are separated by 363 nucleotides AO356_12495: AO356_12495 - hypothetical protein, at 2,852,080 to 2,852,943 _12495 AO356_12500: AO356_12500 - ribonuclease PH, at 2,853,219 to 2,853,941 _12500 AO356_12505: AO356_12505 - orotate phosphoribosyltransferase, at 2,853,976 to 2,854,344 _12505 AO356_12510: AO356_12510 - sodium:glutamate symporter, at 2,854,708 to 2,855,916 _12510 Position (kb) 2853 2854Strain fitness (log2 ratio) -2 -1 0 1 2at 2852.371 kb on - strand, within AO356_12495at 2852.440 kb on - strand, within AO356_12495at 2852.853 kb on - strand, within AO356_12495at 2852.999 kb on - strandat 2852.999 kb on - strandat 2852.999 kb on - strandat 2852.999 kb on - strandat 2853.003 kb on - strandat 2853.035 kb on + strandat 2853.035 kb on + strandat 2853.035 kb on + strandat 2853.035 kb on + strandat 2853.036 kb on - strandat 2853.036 kb on - strandat 2853.036 kb on - strandat 2853.036 kb on - strandat 2853.150 kb on - strandat 2853.150 kb on - strandat 2853.176 kb on + strandat 2853.176 kb on + strandat 2853.176 kb on + strandat 2853.176 kb on + strandat 2853.176 kb on + strandat 2853.176 kb on + strandat 2853.177 kb on - strandat 2853.177 kb on - strandat 2853.178 kb on + strandat 2853.179 kb on - strandat 2853.205 kb on + strandat 2853.205 kb on + strandat 2853.205 kb on + strandat 2853.205 kb on + strandat 2853.205 kb on + strandat 2853.205 kb on + strandat 2853.205 kb on + strandat 2853.205 kb on + strandat 2853.205 kb on + strandat 2853.206 kb on - strandat 2853.206 kb on - strandat 2853.206 kb on - strandat 2853.218 kb on + strandat 2853.218 kb on + strandat 2853.219 kb on - strandat 2853.219 kb on - strandat 2853.270 kb on - strandat 2853.279 kb on + strandat 2853.279 kb on + strandat 2853.279 kb on + strandat 2853.279 kb on + strandat 2853.279 kb on + strandat 2853.279 kb on + strandat 2853.280 kb on - strandat 2853.280 kb on - strandat 2853.280 kb on - strandat 2853.280 kb on - strandat 2853.280 kb on - strandat 2853.304 kb on + strand, within AO356_12500at 2853.305 kb on - strand, within AO356_12500at 2853.305 kb on - strand, within AO356_12500at 2853.324 kb on - strand, within AO356_12500at 2853.324 kb on - strand, within AO356_12500at 2853.324 kb on - strand, within AO356_12500at 2853.324 kb on - strand, within AO356_12500at 2853.324 kb on - strand, within AO356_12500at 2853.408 kb on + strand, within AO356_12500at 2853.409 kb on - strand, within AO356_12500at 2853.479 kb on + strand, within AO356_12500at 2853.479 kb on + strand, within AO356_12500at 2853.479 kb on + strand, within AO356_12500at 2853.558 kb on + strand, within AO356_12500at 2853.559 kb on - strand, within AO356_12500at 2853.559 kb on - strand, within AO356_12500at 2853.559 kb on - strand, within AO356_12500at 2853.559 kb on - strand, within AO356_12500at 2853.559 kb on - strand, within AO356_12500at 2853.559 kb on - strand, within AO356_12500at 2853.559 kb on - strand, within AO356_12500at 2853.559 kb on - strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.723 kb on + strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.724 kb on - strand, within AO356_12500at 2853.753 kb on + strand, within AO356_12500at 2853.753 kb on + strand, within AO356_12500at 2853.753 kb on + strand, within AO356_12500at 2853.754 kb on - strand, within AO356_12500at 2853.754 kb on - strand, within AO356_12500at 2853.872 kb on + strandat 2853.872 kb on + strandat 2853.872 kb on + strandat 2853.872 kb on + strandat 2853.872 kb on + strandat 2853.873 kb on - strandat 2853.873 kb on - strandat 2853.873 kb on - strandat 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.277 kb on + strand, within AO356_12505at 2854.278 kb on - strand, within AO356_12505at 2854.278 kb on - strand, within AO356_12505at 2854.278 kb on - strand, within AO356_12505at 2854.278 kb on - strand, within AO356_12505at 2854.278 kb on - strand, within AO356_12505at 2854.278 kb on - strand, within AO356_12505at 2854.278 kb on - strand, within AO356_12505at 2854.278 kb on - strand, within AO356_12505at 2854.278 kb on - strand, within AO356_12505at 2854.278 kb on - strand, within AO356_12505at 2854.278 kb on - strand, within AO356_12505at 2854.278 kb on - strand, within AO356_12505at 2854.278 kb on - strand, within AO356_12505at 2854.278 kb on - strand, within AO356_12505at 2854.343 kb on - strandat 2854.381 kb on - strandat 2854.467 kb on + strandat 2854.513 kb on - strandat 2854.561 kb on + strandat 2854.561 kb on + strandat 2854.562 kb on - strandat 2854.665 kb on - strandat 2854.682 kb on + strandat 2854.683 kb on - strandat 2854.686 kb on + strandat 2854.686 kb on + strandat 2854.686 kb on + strandat 2854.686 kb on + strandat 2854.688 kb on + strandat 2854.700 kb on - strandat 2854.707 kb on + strandat 2854.707 kb on - strandat 2854.726 kb on + strandat 2854.726 kb on + strandat 2854.751 kb on + strandat 2854.779 kb on + strandat 2854.805 kb on - strandat 2854.805 kb on - strandat 2854.810 kb on - strandat 2854.838 kb on + strand, within AO356_12510at 2854.838 kb on + strand, within AO356_12510at 2854.838 kb on + strand, within AO356_12510at 2854.838 kb on + strand, within AO356_12510at 2854.839 kb on - strand, within AO356_12510at 2854.839 kb on - strand, within AO356_12510at 2854.839 kb on - strand, within AO356_12510at 2854.839 kb on - strand, within AO356_12510at 2854.893 kb on + strand, within AO356_12510at 2854.893 kb on + strand, within AO356_12510at 2854.894 kb on - strand, within AO356_12510

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs
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2,852,371 - AO356_12495 0.34 +0.9
2,852,440 - AO356_12495 0.42 +0.4
2,852,853 - AO356_12495 0.89 -0.3
2,852,999 - -0.2
2,852,999 - +0.9
2,852,999 - -2.4
2,852,999 - +0.3
2,853,003 - +0.1
2,853,035 + +0.1
2,853,035 + +0.0
2,853,035 + -0.2
2,853,035 + +1.9
2,853,036 - +0.9
2,853,036 - +1.0
2,853,036 - -0.1
2,853,036 - -1.3
2,853,150 - -0.1
2,853,150 - +0.2
2,853,176 + -0.2
2,853,176 + +0.3
2,853,176 + +0.8
2,853,176 + +1.1
2,853,176 + +0.2
2,853,176 + +0.0
2,853,177 - +0.3
2,853,177 - +0.1
2,853,178 + +0.1
2,853,179 - -0.7
2,853,205 + +1.6
2,853,205 + +0.4
2,853,205 + -0.7
2,853,205 + -0.7
2,853,205 + +0.1
2,853,205 + +0.5
2,853,205 + +0.0
2,853,205 + +0.1
2,853,205 + +0.1
2,853,206 - -0.7
2,853,206 - +0.7
2,853,206 - -2.0
2,853,218 + +0.6
2,853,218 + -0.9
2,853,219 - +0.1
2,853,219 - -0.4
2,853,270 - -1.1
2,853,279 + +0.1
2,853,279 + +0.0
2,853,279 + -1.0
2,853,279 + -1.4
2,853,279 + +0.1
2,853,279 + -0.5
2,853,280 - -1.2
2,853,280 - +0.3
2,853,280 - +0.3
2,853,280 - -0.5
2,853,280 - +1.4
2,853,304 + AO356_12500 0.12 +0.4
2,853,305 - AO356_12500 0.12 +0.0
2,853,305 - AO356_12500 0.12 -1.0
2,853,324 - AO356_12500 0.15 -0.0
2,853,324 - AO356_12500 0.15 -0.8
2,853,324 - AO356_12500 0.15 +0.3
2,853,324 - AO356_12500 0.15 -0.7
2,853,324 - AO356_12500 0.15 -0.0
2,853,408 + AO356_12500 0.26 -0.7
2,853,409 - AO356_12500 0.26 +0.4
2,853,479 + AO356_12500 0.36 +1.0
2,853,479 + AO356_12500 0.36 -0.0
2,853,479 + AO356_12500 0.36 +0.1
2,853,558 + AO356_12500 0.47 -0.1
2,853,559 - AO356_12500 0.47 -2.1
2,853,559 - AO356_12500 0.47 +0.7
2,853,559 - AO356_12500 0.47 +0.8
2,853,559 - AO356_12500 0.47 +0.2
2,853,559 - AO356_12500 0.47 +0.6
2,853,559 - AO356_12500 0.47 -1.5
2,853,559 - AO356_12500 0.47 -1.9
2,853,559 - AO356_12500 0.47 -0.2
2,853,723 + AO356_12500 0.70 +0.4
2,853,723 + AO356_12500 0.70 -0.7
2,853,723 + AO356_12500 0.70 +0.6
2,853,723 + AO356_12500 0.70 -0.2
2,853,723 + AO356_12500 0.70 -0.4
2,853,723 + AO356_12500 0.70 +0.3
2,853,723 + AO356_12500 0.70 -0.6
2,853,723 + AO356_12500 0.70 +0.1
2,853,723 + AO356_12500 0.70 +0.4
2,853,723 + AO356_12500 0.70 +2.4
2,853,723 + AO356_12500 0.70 +0.1
2,853,724 - AO356_12500 0.70 +0.3
2,853,724 - AO356_12500 0.70 -1.1
2,853,724 - AO356_12500 0.70 -1.3
2,853,724 - AO356_12500 0.70 -0.3
2,853,724 - AO356_12500 0.70 -0.4
2,853,724 - AO356_12500 0.70 -0.5
2,853,724 - AO356_12500 0.70 -1.0
2,853,724 - AO356_12500 0.70 +0.3
2,853,724 - AO356_12500 0.70 +0.3
2,853,724 - AO356_12500 0.70 -1.0
2,853,724 - AO356_12500 0.70 -1.3
2,853,724 - AO356_12500 0.70 -1.8
2,853,724 - AO356_12500 0.70 -0.5
2,853,724 - AO356_12500 0.70 -0.4
2,853,724 - AO356_12500 0.70 -0.1
2,853,724 - AO356_12500 0.70 +0.8
2,853,753 + AO356_12500 0.74 -0.4
2,853,753 + AO356_12500 0.74 -0.9
2,853,753 + AO356_12500 0.74 -0.6
2,853,754 - AO356_12500 0.74 -0.6
2,853,754 - AO356_12500 0.74 -0.1
2,853,872 + -1.3
2,853,872 + -0.2
2,853,872 + +2.1
2,853,872 + -0.8
2,853,872 + -1.5
2,853,873 - +0.4
2,853,873 - -0.5
2,853,873 - -1.8
2,854,277 + AO356_12505 0.82 +1.2
2,854,277 + AO356_12505 0.82 +0.3
2,854,277 + AO356_12505 0.82 +0.8
2,854,277 + AO356_12505 0.82 +0.8
2,854,277 + AO356_12505 0.82 -0.1
2,854,277 + AO356_12505 0.82 -0.7
2,854,277 + AO356_12505 0.82 -0.2
2,854,277 + AO356_12505 0.82 +0.5
2,854,277 + AO356_12505 0.82 +0.2
2,854,277 + AO356_12505 0.82 -0.1
2,854,277 + AO356_12505 0.82 -0.4
2,854,277 + AO356_12505 0.82 +0.2
2,854,277 + AO356_12505 0.82 +0.2
2,854,277 + AO356_12505 0.82 +0.3
2,854,277 + AO356_12505 0.82 +0.9
2,854,277 + AO356_12505 0.82 -0.7
2,854,277 + AO356_12505 0.82 +0.6
2,854,277 + AO356_12505 0.82 +0.9
2,854,278 - AO356_12505 0.82 +0.7
2,854,278 - AO356_12505 0.82 +0.4
2,854,278 - AO356_12505 0.82 +1.5
2,854,278 - AO356_12505 0.82 +0.7
2,854,278 - AO356_12505 0.82 +1.2
2,854,278 - AO356_12505 0.82 +0.1
2,854,278 - AO356_12505 0.82 +0.4
2,854,278 - AO356_12505 0.82 +0.4
2,854,278 - AO356_12505 0.82 +0.2
2,854,278 - AO356_12505 0.82 -0.4
2,854,278 - AO356_12505 0.82 +0.3
2,854,278 - AO356_12505 0.82 +0.2
2,854,278 - AO356_12505 0.82 -0.1
2,854,278 - AO356_12505 0.82 -1.1
2,854,343 - +0.2
2,854,381 - +0.6
2,854,467 + +0.2
2,854,513 - +1.1
2,854,561 + +0.3
2,854,561 + +1.4
2,854,562 - -1.0
2,854,665 - +0.1
2,854,682 + -0.1
2,854,683 - -0.0
2,854,686 + +0.8
2,854,686 + -0.2
2,854,686 + +0.2
2,854,686 + -0.3
2,854,688 + +0.1
2,854,700 - -1.6
2,854,707 + -0.3
2,854,707 - -1.5
2,854,726 + +0.4
2,854,726 + +0.3
2,854,751 + +0.8
2,854,779 + -1.0
2,854,805 - -0.7
2,854,805 - +0.7
2,854,810 - -0.1
2,854,838 + AO356_12510 0.11 -0.5
2,854,838 + AO356_12510 0.11 -0.1
2,854,838 + AO356_12510 0.11 +0.9
2,854,838 + AO356_12510 0.11 +1.4
2,854,839 - AO356_12510 0.11 -1.0
2,854,839 - AO356_12510 0.11 +0.0
2,854,839 - AO356_12510 0.11 -0.6
2,854,839 - AO356_12510 0.11 -1.2
2,854,893 + AO356_12510 0.15 -0.0
2,854,893 + AO356_12510 0.15 -0.1
2,854,894 - AO356_12510 0.15 -0.6

Or see this region's nucleotide sequence