Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07510

Experiment: 4C survival; 1152 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07500 and AO356_07505 are separated by 101 nucleotidesAO356_07505 and AO356_07510 are separated by 243 nucleotidesAO356_07510 and AO356_07515 are separated by 75 nucleotidesAO356_07515 and AO356_07520 are separated by 97 nucleotides AO356_07500: AO356_07500 - molecular chaperone DnaK, at 1,660,556 to 1,662,472 _07500 AO356_07505: AO356_07505 - molecular chaperone GrpE, at 1,662,574 to 1,663,140 _07505 AO356_07510: AO356_07510 - DNA repair protein RecN, at 1,663,384 to 1,665,057 _07510 AO356_07515: AO356_07515 - Fur family transcriptional regulator, at 1,665,133 to 1,665,537 _07515 AO356_07520: AO356_07520 - hypothetical protein, at 1,665,635 to 1,666,162 _07520 Position (kb) 1663 1664 1665 1666Strain fitness (log2 ratio) -2 -1 0 1 2at 1662.520 kb on - strandat 1662.549 kb on - strandat 1662.551 kb on - strandat 1662.551 kb on - strandat 1662.551 kb on - strandat 1662.551 kb on - strandat 1662.551 kb on - strandat 1662.551 kb on - strandat 1662.592 kb on - strandat 1662.592 kb on - strandat 1662.592 kb on - strandat 1662.592 kb on - strandat 1662.592 kb on - strandat 1662.592 kb on - strandat 1663.196 kb on - strandat 1663.196 kb on - strandat 1663.198 kb on - strandat 1663.198 kb on - strandat 1663.239 kb on + strandat 1663.239 kb on + strandat 1663.240 kb on - strandat 1663.240 kb on - strandat 1663.240 kb on - strandat 1663.262 kb on + strandat 1663.263 kb on - strandat 1663.313 kb on - strandat 1663.348 kb on + strandat 1663.348 kb on + strandat 1663.383 kb on + strandat 1663.383 kb on + strandat 1663.383 kb on + strandat 1663.383 kb on + strandat 1663.383 kb on + strandat 1663.383 kb on + strandat 1663.383 kb on + strandat 1663.383 kb on + strandat 1663.383 kb on + strandat 1663.383 kb on + strandat 1663.383 kb on + strandat 1663.383 kb on + strandat 1663.383 kb on + strandat 1663.384 kb on - strandat 1663.384 kb on - strandat 1663.384 kb on - strandat 1663.384 kb on - strandat 1663.384 kb on - strandat 1663.404 kb on - strandat 1663.411 kb on + strandat 1663.411 kb on + strandat 1663.411 kb on + strandat 1663.411 kb on + strandat 1663.412 kb on - strandat 1663.412 kb on - strandat 1663.412 kb on - strandat 1663.699 kb on + strand, within AO356_07510at 1663.700 kb on - strand, within AO356_07510at 1663.700 kb on - strand, within AO356_07510at 1663.828 kb on + strand, within AO356_07510at 1663.828 kb on + strand, within AO356_07510at 1663.828 kb on + strand, within AO356_07510at 1663.828 kb on + strand, within AO356_07510at 1663.949 kb on + strand, within AO356_07510at 1663.949 kb on + strand, within AO356_07510at 1663.949 kb on + strand, within AO356_07510at 1663.949 kb on + strand, within AO356_07510at 1663.949 kb on + strand, within AO356_07510at 1663.950 kb on - strand, within AO356_07510at 1663.950 kb on - strand, within AO356_07510at 1663.950 kb on - strand, within AO356_07510at 1663.950 kb on - strand, within AO356_07510at 1663.958 kb on - strand, within AO356_07510at 1664.281 kb on + strand, within AO356_07510at 1664.282 kb on - strand, within AO356_07510at 1664.282 kb on - strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.308 kb on + strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.309 kb on - strand, within AO356_07510at 1664.310 kb on + strand, within AO356_07510at 1664.311 kb on - strand, within AO356_07510at 1664.311 kb on - strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.440 kb on + strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.441 kb on - strand, within AO356_07510at 1664.453 kb on - strand, within AO356_07510at 1664.453 kb on - strand, within AO356_07510at 1664.756 kb on + strand, within AO356_07510at 1664.756 kb on + strand, within AO356_07510at 1664.757 kb on - strand, within AO356_07510at 1664.757 kb on - strand, within AO356_07510at 1664.894 kb on + strandat 1664.894 kb on + strandat 1664.895 kb on - strandat 1665.134 kb on + strandat 1665.134 kb on + strandat 1665.135 kb on - strandat 1665.135 kb on - strandat 1665.135 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs
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1,662,520 - -1.0
1,662,549 - +0.2
1,662,551 - -0.6
1,662,551 - +0.3
1,662,551 - -0.2
1,662,551 - -0.5
1,662,551 - +0.7
1,662,551 - +1.4
1,662,592 - +0.5
1,662,592 - -1.1
1,662,592 - +2.3
1,662,592 - -1.0
1,662,592 - -0.4
1,662,592 - +0.3
1,663,196 - +0.7
1,663,196 - +0.3
1,663,198 - -0.8
1,663,198 - -0.1
1,663,239 + -1.3
1,663,239 + +0.2
1,663,240 - -0.3
1,663,240 - +0.3
1,663,240 - -0.4
1,663,262 + +0.7
1,663,263 - +0.8
1,663,313 - +0.2
1,663,348 + +0.4
1,663,348 + +0.3
1,663,383 + +0.4
1,663,383 + -0.2
1,663,383 + +0.7
1,663,383 + -0.1
1,663,383 + +0.6
1,663,383 + -1.9
1,663,383 + -2.6
1,663,383 + +0.8
1,663,383 + +0.6
1,663,383 + -1.4
1,663,383 + +0.0
1,663,383 + -0.5
1,663,383 + +0.3
1,663,384 - -0.7
1,663,384 - +0.1
1,663,384 - -1.0
1,663,384 - -1.5
1,663,384 - -1.4
1,663,404 - -0.3
1,663,411 + -0.1
1,663,411 + +0.3
1,663,411 + +1.5
1,663,411 + -0.0
1,663,412 - +0.4
1,663,412 - -0.1
1,663,412 - +0.2
1,663,699 + AO356_07510 0.19 -0.7
1,663,700 - AO356_07510 0.19 +0.7
1,663,700 - AO356_07510 0.19 -0.7
1,663,828 + AO356_07510 0.27 +1.9
1,663,828 + AO356_07510 0.27 +0.3
1,663,828 + AO356_07510 0.27 -0.7
1,663,828 + AO356_07510 0.27 +0.1
1,663,949 + AO356_07510 0.34 -0.3
1,663,949 + AO356_07510 0.34 -0.3
1,663,949 + AO356_07510 0.34 -0.6
1,663,949 + AO356_07510 0.34 +0.8
1,663,949 + AO356_07510 0.34 -1.2
1,663,950 - AO356_07510 0.34 +0.4
1,663,950 - AO356_07510 0.34 -0.7
1,663,950 - AO356_07510 0.34 -0.9
1,663,950 - AO356_07510 0.34 -0.2
1,663,958 - AO356_07510 0.34 -0.8
1,664,281 + AO356_07510 0.54 +0.7
1,664,282 - AO356_07510 0.54 -0.7
1,664,282 - AO356_07510 0.54 -0.9
1,664,308 + AO356_07510 0.55 +0.2
1,664,308 + AO356_07510 0.55 -1.3
1,664,308 + AO356_07510 0.55 -0.4
1,664,308 + AO356_07510 0.55 -0.3
1,664,308 + AO356_07510 0.55 -0.9
1,664,308 + AO356_07510 0.55 +0.1
1,664,308 + AO356_07510 0.55 -0.5
1,664,308 + AO356_07510 0.55 -1.5
1,664,308 + AO356_07510 0.55 +1.0
1,664,308 + AO356_07510 0.55 -0.5
1,664,308 + AO356_07510 0.55 +0.5
1,664,308 + AO356_07510 0.55 -0.5
1,664,308 + AO356_07510 0.55 -2.4
1,664,308 + AO356_07510 0.55 +0.3
1,664,308 + AO356_07510 0.55 -0.8
1,664,308 + AO356_07510 0.55 -2.3
1,664,308 + AO356_07510 0.55 +0.5
1,664,308 + AO356_07510 0.55 -0.8
1,664,308 + AO356_07510 0.55 +0.1
1,664,309 - AO356_07510 0.55 -0.2
1,664,309 - AO356_07510 0.55 -0.7
1,664,309 - AO356_07510 0.55 -0.3
1,664,309 - AO356_07510 0.55 -1.2
1,664,309 - AO356_07510 0.55 -0.6
1,664,309 - AO356_07510 0.55 +0.4
1,664,309 - AO356_07510 0.55 +0.1
1,664,309 - AO356_07510 0.55 +1.9
1,664,309 - AO356_07510 0.55 +0.5
1,664,309 - AO356_07510 0.55 -0.3
1,664,309 - AO356_07510 0.55 -0.3
1,664,309 - AO356_07510 0.55 -0.4
1,664,309 - AO356_07510 0.55 -0.3
1,664,309 - AO356_07510 0.55 -0.7
1,664,309 - AO356_07510 0.55 +1.2
1,664,309 - AO356_07510 0.55 -2.1
1,664,309 - AO356_07510 0.55 +0.1
1,664,309 - AO356_07510 0.55 -1.0
1,664,310 + AO356_07510 0.55 +0.2
1,664,311 - AO356_07510 0.55 -1.4
1,664,311 - AO356_07510 0.55 -0.5
1,664,440 + AO356_07510 0.63 +0.0
1,664,440 + AO356_07510 0.63 -0.3
1,664,440 + AO356_07510 0.63 +0.8
1,664,440 + AO356_07510 0.63 -0.3
1,664,440 + AO356_07510 0.63 +0.3
1,664,440 + AO356_07510 0.63 -0.8
1,664,440 + AO356_07510 0.63 -0.2
1,664,440 + AO356_07510 0.63 +1.0
1,664,440 + AO356_07510 0.63 -0.7
1,664,441 - AO356_07510 0.63 +0.1
1,664,441 - AO356_07510 0.63 -0.5
1,664,441 - AO356_07510 0.63 -2.5
1,664,441 - AO356_07510 0.63 -0.1
1,664,441 - AO356_07510 0.63 +0.5
1,664,441 - AO356_07510 0.63 -0.1
1,664,441 - AO356_07510 0.63 -1.1
1,664,441 - AO356_07510 0.63 +0.2
1,664,441 - AO356_07510 0.63 +1.1
1,664,453 - AO356_07510 0.64 -1.7
1,664,453 - AO356_07510 0.64 +0.0
1,664,756 + AO356_07510 0.82 -0.1
1,664,756 + AO356_07510 0.82 -0.6
1,664,757 - AO356_07510 0.82 +1.2
1,664,757 - AO356_07510 0.82 +0.2
1,664,894 + -0.1
1,664,894 + -0.8
1,664,895 - +0.4
1,665,134 + -1.7
1,665,134 + -0.8
1,665,135 - -1.5
1,665,135 - -1.4
1,665,135 - -0.6

Or see this region's nucleotide sequence