Experiment: 4C survival; 1152 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04400 and AO356_04405 are separated by 159 nucleotides AO356_04405 and AO356_04410 are separated by 152 nucleotides AO356_04410 and AO356_04415 are separated by 124 nucleotides AO356_04415 and AO356_04420 overlap by 4 nucleotides
AO356_04400: AO356_04400 - hypothetical protein, at 998,062 to 998,511
_04400
AO356_04405: AO356_04405 - NADH dehydrogenase, at 998,671 to 999,264
_04405
AO356_04410: AO356_04410 - hydroxyacid dehydrogenase, at 999,417 to 1,000,349
_04410
AO356_04415: AO356_04415 - hypothetical protein, at 1,000,474 to 1,000,767
_04415
AO356_04420: AO356_04420 - ribonuclease D, at 1,000,764 to 1,001,897
_04420
Position (kb)
999
1000
1001 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 998.534 kb on - strand at 998.552 kb on + strand at 998.553 kb on - strand at 998.553 kb on - strand at 998.628 kb on + strand at 998.628 kb on + strand at 998.628 kb on + strand at 998.628 kb on + strand at 998.628 kb on + strand at 998.628 kb on + strand at 998.628 kb on + strand at 998.628 kb on + strand at 998.628 kb on + strand at 998.629 kb on - strand at 998.629 kb on - strand at 998.629 kb on - strand at 998.816 kb on - strand, within AO356_04405 at 998.843 kb on - strand, within AO356_04405 at 998.843 kb on - strand, within AO356_04405 at 999.262 kb on + strand at 999.269 kb on - strand at 999.269 kb on - strand at 999.733 kb on + strand, within AO356_04410 at 999.733 kb on + strand, within AO356_04410 at 999.733 kb on + strand, within AO356_04410 at 999.733 kb on + strand, within AO356_04410 at 999.733 kb on + strand, within AO356_04410 at 999.733 kb on + strand, within AO356_04410 at 999.756 kb on - strand, within AO356_04410 at 999.778 kb on + strand, within AO356_04410 at 999.778 kb on + strand, within AO356_04410 at 999.778 kb on + strand, within AO356_04410 at 999.778 kb on + strand, within AO356_04410 at 999.779 kb on - strand, within AO356_04410 at 999.779 kb on - strand, within AO356_04410 at 999.779 kb on - strand, within AO356_04410 at 999.779 kb on - strand, within AO356_04410 at 999.779 kb on - strand, within AO356_04410 at 999.779 kb on - strand, within AO356_04410 at 999.868 kb on + strand, within AO356_04410 at 999.868 kb on + strand, within AO356_04410 at 999.868 kb on + strand, within AO356_04410 at 999.868 kb on + strand, within AO356_04410 at 999.868 kb on + strand, within AO356_04410 at 999.869 kb on - strand, within AO356_04410 at 999.869 kb on - strand, within AO356_04410 at 999.869 kb on - strand, within AO356_04410 at 1000.039 kb on + strand, within AO356_04410 at 1000.039 kb on + strand, within AO356_04410 at 1000.039 kb on + strand, within AO356_04410 at 1000.039 kb on + strand, within AO356_04410 at 1000.039 kb on + strand, within AO356_04410 at 1000.040 kb on - strand, within AO356_04410 at 1000.040 kb on - strand, within AO356_04410 at 1000.040 kb on - strand, within AO356_04410 at 1000.040 kb on - strand, within AO356_04410 at 1000.040 kb on - strand, within AO356_04410 at 1000.040 kb on - strand, within AO356_04410 at 1000.040 kb on - strand, within AO356_04410 at 1000.040 kb on - strand, within AO356_04410 at 1000.052 kb on - strand, within AO356_04410 at 1000.281 kb on - strand at 1000.312 kb on + strand at 1000.313 kb on - strand at 1000.313 kb on - strand at 1000.313 kb on - strand at 1000.313 kb on - strand at 1000.423 kb on - strand at 1000.423 kb on - strand at 1000.524 kb on - strand, within AO356_04415 at 1000.556 kb on + strand, within AO356_04415 at 1000.557 kb on - strand, within AO356_04415 at 1000.557 kb on - strand, within AO356_04415 at 1000.712 kb on + strand, within AO356_04415 at 1000.712 kb on + strand, within AO356_04415 at 1000.712 kb on + strand, within AO356_04415 at 1000.712 kb on + strand, within AO356_04415 at 1000.712 kb on + strand, within AO356_04415 at 1000.712 kb on + strand, within AO356_04415 at 1000.712 kb on + strand, within AO356_04415 at 1000.712 kb on + strand, within AO356_04415 at 1000.712 kb on + strand, within AO356_04415 at 1000.712 kb on + strand, within AO356_04415 at 1000.712 kb on + strand, within AO356_04415 at 1000.712 kb on + strand, within AO356_04415 at 1000.713 kb on - strand, within AO356_04415 at 1000.713 kb on - strand, within AO356_04415 at 1000.713 kb on - strand, within AO356_04415 at 1000.713 kb on - strand, within AO356_04415 at 1000.713 kb on - strand, within AO356_04415 at 1000.718 kb on + strand, within AO356_04415 at 1000.718 kb on + strand, within AO356_04415 at 1000.718 kb on + strand, within AO356_04415 at 1000.718 kb on + strand, within AO356_04415 at 1000.718 kb on + strand, within AO356_04415 at 1000.718 kb on + strand, within AO356_04415 at 1000.718 kb on + strand, within AO356_04415 at 1000.718 kb on + strand, within AO356_04415 at 1000.719 kb on - strand, within AO356_04415 at 1000.719 kb on - strand, within AO356_04415 at 1000.719 kb on - strand, within AO356_04415 at 1000.719 kb on - strand, within AO356_04415 at 1000.719 kb on - strand, within AO356_04415 at 1000.719 kb on - strand, within AO356_04415 at 1000.719 kb on - strand, within AO356_04415 at 1000.719 kb on - strand, within AO356_04415 at 1000.745 kb on + strand at 1000.746 kb on - strand at 1000.759 kb on - strand at 1001.254 kb on - strand, within AO356_04420 at 1001.254 kb on - strand, within AO356_04420
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs remove 998,534 - -0.0 998,552 + +0.5 998,553 - -0.4 998,553 - +0.3 998,628 + +1.2 998,628 + +1.0 998,628 + +1.1 998,628 + -0.2 998,628 + +0.5 998,628 + -0.6 998,628 + -0.3 998,628 + -0.6 998,628 + +1.9 998,629 - -1.4 998,629 - +0.6 998,629 - +0.5 998,816 - AO356_04405 0.24 +0.4 998,843 - AO356_04405 0.29 +0.1 998,843 - AO356_04405 0.29 -0.3 999,262 + -1.0 999,269 - +0.2 999,269 - -0.3 999,733 + AO356_04410 0.34 +0.7 999,733 + AO356_04410 0.34 -0.2 999,733 + AO356_04410 0.34 +0.4 999,733 + AO356_04410 0.34 -0.5 999,733 + AO356_04410 0.34 -0.5 999,733 + AO356_04410 0.34 -0.8 999,756 - AO356_04410 0.36 +0.2 999,778 + AO356_04410 0.39 -2.0 999,778 + AO356_04410 0.39 -0.1 999,778 + AO356_04410 0.39 +0.9 999,778 + AO356_04410 0.39 -0.2 999,779 - AO356_04410 0.39 +0.1 999,779 - AO356_04410 0.39 +0.7 999,779 - AO356_04410 0.39 -0.2 999,779 - AO356_04410 0.39 +0.2 999,779 - AO356_04410 0.39 -0.5 999,779 - AO356_04410 0.39 -1.3 999,868 + AO356_04410 0.48 +0.0 999,868 + AO356_04410 0.48 +0.3 999,868 + AO356_04410 0.48 +0.2 999,868 + AO356_04410 0.48 -0.1 999,868 + AO356_04410 0.48 +0.5 999,869 - AO356_04410 0.48 +0.7 999,869 - AO356_04410 0.48 -0.1 999,869 - AO356_04410 0.48 +0.6 1,000,039 + AO356_04410 0.67 -0.9 1,000,039 + AO356_04410 0.67 -2.4 1,000,039 + AO356_04410 0.67 +1.0 1,000,039 + AO356_04410 0.67 -0.6 1,000,039 + AO356_04410 0.67 -0.2 1,000,040 - AO356_04410 0.67 -0.0 1,000,040 - AO356_04410 0.67 +0.2 1,000,040 - AO356_04410 0.67 -0.4 1,000,040 - AO356_04410 0.67 -0.5 1,000,040 - AO356_04410 0.67 -0.3 1,000,040 - AO356_04410 0.67 +0.7 1,000,040 - AO356_04410 0.67 -2.0 1,000,040 - AO356_04410 0.67 -0.3 1,000,052 - AO356_04410 0.68 -1.3 1,000,281 - +0.0 1,000,312 + -0.6 1,000,313 - +0.8 1,000,313 - +0.8 1,000,313 - -1.3 1,000,313 - -0.7 1,000,423 - +0.5 1,000,423 - +0.3 1,000,524 - AO356_04415 0.17 +1.6 1,000,556 + AO356_04415 0.28 -2.7 1,000,557 - AO356_04415 0.28 +0.8 1,000,557 - AO356_04415 0.28 -0.4 1,000,712 + AO356_04415 0.81 -0.2 1,000,712 + AO356_04415 0.81 -0.1 1,000,712 + AO356_04415 0.81 -1.5 1,000,712 + AO356_04415 0.81 +1.5 1,000,712 + AO356_04415 0.81 -0.5 1,000,712 + AO356_04415 0.81 -1.7 1,000,712 + AO356_04415 0.81 +0.7 1,000,712 + AO356_04415 0.81 +0.4 1,000,712 + AO356_04415 0.81 +1.1 1,000,712 + AO356_04415 0.81 -1.6 1,000,712 + AO356_04415 0.81 -0.3 1,000,712 + AO356_04415 0.81 +0.1 1,000,713 - AO356_04415 0.81 +0.0 1,000,713 - AO356_04415 0.81 -1.1 1,000,713 - AO356_04415 0.81 -0.7 1,000,713 - AO356_04415 0.81 +0.5 1,000,713 - AO356_04415 0.81 +0.2 1,000,718 + AO356_04415 0.83 -1.8 1,000,718 + AO356_04415 0.83 +0.6 1,000,718 + AO356_04415 0.83 -0.9 1,000,718 + AO356_04415 0.83 -1.0 1,000,718 + AO356_04415 0.83 -0.3 1,000,718 + AO356_04415 0.83 +0.0 1,000,718 + AO356_04415 0.83 +0.7 1,000,718 + AO356_04415 0.83 +0.6 1,000,719 - AO356_04415 0.83 -0.5 1,000,719 - AO356_04415 0.83 -1.1 1,000,719 - AO356_04415 0.83 +0.4 1,000,719 - AO356_04415 0.83 +0.2 1,000,719 - AO356_04415 0.83 +0.1 1,000,719 - AO356_04415 0.83 +0.1 1,000,719 - AO356_04415 0.83 -0.7 1,000,719 - AO356_04415 0.83 +0.3 1,000,745 + +0.4 1,000,746 - +1.2 1,000,759 - +0.2 1,001,254 - AO356_04420 0.43 +0.0 1,001,254 - AO356_04420 0.43 -0.0
Or see this region's nucleotide sequence