Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04330

Experiment: 4C survival; 1152 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04325 and AO356_04330 overlap by 4 nucleotidesAO356_04330 and AO356_04335 overlap by 4 nucleotidesAO356_04335 and AO356_04340 are separated by 64 nucleotides AO356_04325: AO356_04325 - allophanate hydrolase, at 985,215 to 986,135 _04325 AO356_04330: AO356_04330 - allophanate hydrolase, at 986,132 to 986,836 _04330 AO356_04335: AO356_04335 - hypothetical protein, at 986,833 to 987,585 _04335 AO356_04340: AO356_04340 - MFS transporter, at 987,650 to 988,936 _04340 Position (kb) 986 987Strain fitness (log2 ratio) -2 -1 0 1 2at 985.174 kb on + strandat 985.174 kb on + strandat 985.174 kb on + strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.178 kb on + strandat 985.178 kb on + strandat 985.178 kb on + strandat 985.178 kb on + strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.439 kb on + strand, within AO356_04325at 985.440 kb on - strand, within AO356_04325at 985.440 kb on - strand, within AO356_04325at 985.468 kb on + strand, within AO356_04325at 985.670 kb on - strand, within AO356_04325at 985.795 kb on + strand, within AO356_04325at 985.887 kb on + strand, within AO356_04325at 985.888 kb on - strand, within AO356_04325at 985.949 kb on + strand, within AO356_04325at 986.235 kb on + strand, within AO356_04330at 986.235 kb on + strand, within AO356_04330at 986.408 kb on + strand, within AO356_04330at 986.408 kb on + strand, within AO356_04330at 986.457 kb on + strand, within AO356_04330at 986.457 kb on + strand, within AO356_04330at 986.550 kb on + strand, within AO356_04330at 986.664 kb on + strand, within AO356_04330at 986.664 kb on + strand, within AO356_04330at 986.685 kb on + strand, within AO356_04330at 986.685 kb on + strand, within AO356_04330at 986.685 kb on + strand, within AO356_04330at 986.919 kb on + strand, within AO356_04335at 986.919 kb on + strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 987.108 kb on - strand, within AO356_04335at 987.179 kb on + strand, within AO356_04335at 987.180 kb on - strand, within AO356_04335at 987.239 kb on + strand, within AO356_04335at 987.239 kb on + strand, within AO356_04335at 987.240 kb on - strand, within AO356_04335at 987.240 kb on - strand, within AO356_04335at 987.240 kb on - strand, within AO356_04335at 987.263 kb on + strand, within AO356_04335at 987.317 kb on + strand, within AO356_04335at 987.350 kb on + strand, within AO356_04335at 987.350 kb on + strand, within AO356_04335at 987.350 kb on + strand, within AO356_04335at 987.350 kb on + strand, within AO356_04335at 987.351 kb on - strand, within AO356_04335at 987.351 kb on - strand, within AO356_04335at 987.390 kb on - strand, within AO356_04335at 987.572 kb on - strandat 987.601 kb on - strandat 987.617 kb on + strandat 987.617 kb on + strandat 987.644 kb on + strandat 987.651 kb on + strandat 987.652 kb on - strandat 987.652 kb on - strandat 987.717 kb on + strandat 987.775 kb on + strandat 987.776 kb on - strandat 987.823 kb on - strand, within AO356_04340at 987.823 kb on - strand, within AO356_04340

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs
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985,174 + +0.0
985,174 + +0.6
985,174 + +0.2
985,175 - +1.0
985,175 - +0.4
985,175 - +0.7
985,175 - -1.1
985,175 - -0.9
985,175 - -0.1
985,175 - -0.4
985,175 - +1.9
985,175 - -1.6
985,178 + -0.2
985,178 + +0.3
985,178 + +0.1
985,178 + -0.7
985,179 - +0.5
985,179 - +0.2
985,179 - -0.8
985,179 - +0.4
985,179 - +0.0
985,179 - -1.4
985,179 - -2.3
985,439 + AO356_04325 0.24 -1.7
985,440 - AO356_04325 0.24 -1.6
985,440 - AO356_04325 0.24 +0.3
985,468 + AO356_04325 0.27 -0.3
985,670 - AO356_04325 0.49 -0.7
985,795 + AO356_04325 0.63 -0.6
985,887 + AO356_04325 0.73 -1.4
985,888 - AO356_04325 0.73 -0.4
985,949 + AO356_04325 0.80 -1.4
986,235 + AO356_04330 0.15 -1.7
986,235 + AO356_04330 0.15 -0.4
986,408 + AO356_04330 0.39 -1.1
986,408 + AO356_04330 0.39 -1.6
986,457 + AO356_04330 0.46 -1.5
986,457 + AO356_04330 0.46 -0.8
986,550 + AO356_04330 0.59 -1.3
986,664 + AO356_04330 0.75 -2.6
986,664 + AO356_04330 0.75 -0.7
986,685 + AO356_04330 0.78 -0.5
986,685 + AO356_04330 0.78 -0.2
986,685 + AO356_04330 0.78 -0.7
986,919 + AO356_04335 0.11 -1.1
986,919 + AO356_04335 0.11 +0.0
986,920 - AO356_04335 0.12 -0.8
986,920 - AO356_04335 0.12 -1.1
986,920 - AO356_04335 0.12 -1.0
986,920 - AO356_04335 0.12 -1.8
986,920 - AO356_04335 0.12 -1.0
987,108 - AO356_04335 0.37 +0.5
987,179 + AO356_04335 0.46 -1.5
987,180 - AO356_04335 0.46 +0.7
987,239 + AO356_04335 0.54 -0.3
987,239 + AO356_04335 0.54 -0.5
987,240 - AO356_04335 0.54 -1.6
987,240 - AO356_04335 0.54 +0.3
987,240 - AO356_04335 0.54 -0.7
987,263 + AO356_04335 0.57 -1.7
987,317 + AO356_04335 0.64 -1.0
987,350 + AO356_04335 0.69 -0.7
987,350 + AO356_04335 0.69 -0.3
987,350 + AO356_04335 0.69 -1.1
987,350 + AO356_04335 0.69 -0.7
987,351 - AO356_04335 0.69 +0.1
987,351 - AO356_04335 0.69 -1.3
987,390 - AO356_04335 0.74 -1.8
987,572 - +0.2
987,601 - -0.1
987,617 + -0.2
987,617 + -0.0
987,644 + -0.8
987,651 + -0.4
987,652 - -0.9
987,652 - -0.4
987,717 + -1.3
987,775 + +1.3
987,776 - +0.2
987,823 - AO356_04340 0.13 +0.1
987,823 - AO356_04340 0.13 +1.1

Or see this region's nucleotide sequence