Experiment: 4C survival; 1152 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03000 and AO356_03005 are separated by 72 nucleotides AO356_03005 and AO356_03010 are separated by 92 nucleotides AO356_03010 and AO356_03015 are separated by 189 nucleotides AO356_03015 and AO356_03020 are separated by 29 nucleotides
AO356_03000: AO356_03000 - pseudouridine synthase, at 669,611 to 670,501
_03000
AO356_03005: AO356_03005 - transcriptional regulator, at 670,574 to 670,894
_03005
AO356_03010: AO356_03010 - glutaredoxin, at 670,987 to 671,223
_03010
AO356_03015: AO356_03015 - sodium:proton antiporter, at 671,413 to 673,125
_03015
AO356_03020: AO356_03020 - ammonium transporter, at 673,155 to 674,363
_03020
Position (kb) 671
672
673
674 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 670.452 kb on + strand at 670.453 kb on - strand at 670.453 kb on - strand at 670.453 kb on - strand at 670.453 kb on - strand at 670.460 kb on - strand at 670.460 kb on - strand at 670.575 kb on + strand at 670.575 kb on + strand at 670.575 kb on + strand at 670.665 kb on + strand, within AO356_03005 at 670.666 kb on - strand, within AO356_03005 at 670.666 kb on - strand, within AO356_03005 at 670.674 kb on + strand, within AO356_03005 at 670.674 kb on + strand, within AO356_03005 at 670.674 kb on + strand, within AO356_03005 at 670.675 kb on - strand, within AO356_03005 at 670.675 kb on - strand, within AO356_03005 at 670.675 kb on - strand, within AO356_03005 at 670.862 kb on + strand, within AO356_03005 at 670.863 kb on - strand at 670.863 kb on - strand at 670.863 kb on - strand at 670.911 kb on + strand at 670.912 kb on - strand at 670.925 kb on + strand at 670.944 kb on + strand at 671.081 kb on + strand, within AO356_03010 at 671.112 kb on + strand, within AO356_03010 at 671.153 kb on - strand, within AO356_03010 at 671.153 kb on - strand, within AO356_03010 at 671.153 kb on - strand, within AO356_03010 at 671.245 kb on + strand at 671.258 kb on + strand at 671.258 kb on + strand at 671.259 kb on - strand at 671.338 kb on + strand at 671.338 kb on + strand at 671.338 kb on + strand at 671.339 kb on - strand at 671.339 kb on - strand at 671.339 kb on - strand at 671.339 kb on - strand at 671.377 kb on + strand at 671.377 kb on + strand at 671.378 kb on - strand at 671.378 kb on - strand at 671.378 kb on - strand at 671.391 kb on + strand at 671.391 kb on + strand at 671.391 kb on + strand at 671.391 kb on + strand at 671.391 kb on + strand at 671.391 kb on + strand at 671.392 kb on - strand at 671.932 kb on + strand, within AO356_03015 at 671.943 kb on - strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.195 kb on - strand, within AO356_03015 at 672.195 kb on - strand, within AO356_03015 at 672.195 kb on - strand, within AO356_03015 at 672.195 kb on - strand, within AO356_03015 at 672.893 kb on + strand, within AO356_03015 at 672.894 kb on - strand, within AO356_03015 at 673.124 kb on - strand at 673.124 kb on - strand at 673.124 kb on - strand at 673.133 kb on + strand at 673.134 kb on - strand at 673.142 kb on + strand at 673.142 kb on + strand at 673.142 kb on + strand at 673.142 kb on + strand at 673.142 kb on + strand at 673.143 kb on - strand at 673.143 kb on - strand at 673.143 kb on - strand at 673.143 kb on - strand at 673.205 kb on - strand at 673.205 kb on - strand at 673.205 kb on - strand at 673.207 kb on + strand at 673.207 kb on + strand at 673.207 kb on + strand at 673.208 kb on - strand at 673.208 kb on - strand at 673.208 kb on - strand at 673.208 kb on - strand at 673.258 kb on + strand at 673.259 kb on - strand at 674.024 kb on + strand, within AO356_03020 at 674.024 kb on + strand, within AO356_03020 at 674.093 kb on - strand, within AO356_03020 at 674.113 kb on - strand, within AO356_03020
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs remove 670,452 + -1.5 670,453 - +1.0 670,453 - +0.3 670,453 - -0.7 670,453 - +0.3 670,460 - +0.7 670,460 - -1.4 670,575 + -0.2 670,575 + -2.8 670,575 + -1.6 670,665 + AO356_03005 0.28 +0.3 670,666 - AO356_03005 0.29 -0.6 670,666 - AO356_03005 0.29 +0.5 670,674 + AO356_03005 0.31 +1.0 670,674 + AO356_03005 0.31 -0.6 670,674 + AO356_03005 0.31 +0.5 670,675 - AO356_03005 0.31 -0.0 670,675 - AO356_03005 0.31 +0.3 670,675 - AO356_03005 0.31 -0.2 670,862 + AO356_03005 0.90 +0.2 670,863 - +0.0 670,863 - +0.3 670,863 - +0.5 670,911 + -0.1 670,912 - +0.6 670,925 + +0.2 670,944 + +1.6 671,081 + AO356_03010 0.40 -0.6 671,112 + AO356_03010 0.53 -1.4 671,153 - AO356_03010 0.70 -0.5 671,153 - AO356_03010 0.70 +0.8 671,153 - AO356_03010 0.70 +0.2 671,245 + +0.4 671,258 + +2.1 671,258 + -1.0 671,259 - -0.2 671,338 + -0.2 671,338 + +1.9 671,338 + -0.4 671,339 - -0.8 671,339 - -0.3 671,339 - -0.9 671,339 - -0.5 671,377 + +0.5 671,377 + +1.1 671,378 - +0.6 671,378 - +0.4 671,378 - +0.0 671,391 + +1.5 671,391 + +0.5 671,391 + +0.2 671,391 + -0.9 671,391 + -0.5 671,391 + -0.9 671,392 - -0.7 671,932 + AO356_03015 0.30 -0.6 671,943 - AO356_03015 0.31 +0.0 672,194 + AO356_03015 0.46 -0.1 672,194 + AO356_03015 0.46 -0.4 672,194 + AO356_03015 0.46 -0.6 672,194 + AO356_03015 0.46 +0.3 672,194 + AO356_03015 0.46 -1.4 672,194 + AO356_03015 0.46 +1.1 672,194 + AO356_03015 0.46 +0.1 672,194 + AO356_03015 0.46 -1.3 672,194 + AO356_03015 0.46 -0.2 672,194 + AO356_03015 0.46 +0.0 672,194 + AO356_03015 0.46 -1.8 672,194 + AO356_03015 0.46 -0.5 672,195 - AO356_03015 0.46 -0.4 672,195 - AO356_03015 0.46 -1.3 672,195 - AO356_03015 0.46 +0.5 672,195 - AO356_03015 0.46 -0.8 672,893 + AO356_03015 0.86 -0.2 672,894 - AO356_03015 0.86 +1.0 673,124 - -0.4 673,124 - -0.7 673,124 - -0.3 673,133 + -1.2 673,134 - +0.2 673,142 + +1.3 673,142 + +0.1 673,142 + -0.2 673,142 + +0.6 673,142 + -1.1 673,143 - +0.2 673,143 - +0.4 673,143 - +0.3 673,143 - +0.1 673,205 - -0.1 673,205 - +1.0 673,205 - +0.6 673,207 + +0.3 673,207 + +0.4 673,207 + +1.4 673,208 - +0.3 673,208 - -0.3 673,208 - +0.1 673,208 - -0.3 673,258 + +0.4 673,259 - +0.0 674,024 + AO356_03020 0.72 +0.1 674,024 + AO356_03020 0.72 -0.8 674,093 - AO356_03020 0.78 -0.4 674,113 - AO356_03020 0.79 -0.3
Or see this region's nucleotide sequence