Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00580

Experiment: 4C survival; 1152 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00570 and AO356_00575 are separated by 51 nucleotidesAO356_00575 and AO356_00580 are separated by 216 nucleotidesAO356_00580 and AO356_00585 are separated by 64 nucleotides AO356_00570: AO356_00570 - phosphoglycerate mutase, at 123,484 to 124,194 _00570 AO356_00575: AO356_00575 - SCP-2 family sterol carrier protein, at 124,246 to 124,560 _00575 AO356_00580: AO356_00580 - formyl transferase, at 124,777 to 126,495 _00580 AO356_00585: AO356_00585 - LysR family transcriptional regulator, at 126,560 to 127,423 _00585 Position (kb) 124 125 126 127Strain fitness (log2 ratio) -2 -1 0 1 2at 123.804 kb on + strand, within AO356_00570at 123.804 kb on + strand, within AO356_00570at 123.847 kb on - strand, within AO356_00570at 123.847 kb on - strand, within AO356_00570at 123.847 kb on - strand, within AO356_00570at 123.886 kb on + strand, within AO356_00570at 123.886 kb on + strand, within AO356_00570at 123.887 kb on - strand, within AO356_00570at 123.887 kb on - strand, within AO356_00570at 124.204 kb on - strandat 124.208 kb on + strandat 124.209 kb on - strandat 124.209 kb on - strandat 124.209 kb on - strandat 124.209 kb on - strandat 124.209 kb on - strandat 124.221 kb on + strandat 124.232 kb on + strandat 124.232 kb on + strandat 124.233 kb on - strandat 124.233 kb on - strandat 124.233 kb on - strandat 124.268 kb on + strandat 124.268 kb on + strandat 124.269 kb on - strandat 124.323 kb on - strand, within AO356_00575at 124.323 kb on - strand, within AO356_00575at 124.707 kb on - strandat 124.707 kb on - strandat 124.707 kb on - strandat 125.182 kb on + strand, within AO356_00580at 125.182 kb on + strand, within AO356_00580at 125.182 kb on + strand, within AO356_00580at 125.183 kb on - strand, within AO356_00580at 125.183 kb on - strand, within AO356_00580at 125.183 kb on - strand, within AO356_00580at 125.183 kb on - strand, within AO356_00580at 125.183 kb on - strand, within AO356_00580at 125.184 kb on + strand, within AO356_00580at 125.185 kb on - strand, within AO356_00580at 125.239 kb on + strand, within AO356_00580at 125.273 kb on - strand, within AO356_00580at 125.428 kb on + strand, within AO356_00580at 125.429 kb on - strand, within AO356_00580at 125.434 kb on + strand, within AO356_00580at 125.434 kb on + strand, within AO356_00580at 125.435 kb on - strand, within AO356_00580at 125.477 kb on + strand, within AO356_00580at 125.477 kb on + strand, within AO356_00580at 125.597 kb on + strand, within AO356_00580at 125.597 kb on + strand, within AO356_00580at 125.597 kb on + strand, within AO356_00580at 125.597 kb on + strand, within AO356_00580at 125.598 kb on - strand, within AO356_00580at 125.598 kb on - strand, within AO356_00580at 125.598 kb on - strand, within AO356_00580at 125.598 kb on - strand, within AO356_00580at 125.598 kb on - strand, within AO356_00580at 125.620 kb on - strand, within AO356_00580at 125.671 kb on + strand, within AO356_00580at 125.671 kb on + strand, within AO356_00580at 125.671 kb on + strand, within AO356_00580at 125.728 kb on + strand, within AO356_00580at 125.728 kb on + strand, within AO356_00580at 125.728 kb on + strand, within AO356_00580at 125.729 kb on - strand, within AO356_00580at 125.906 kb on + strand, within AO356_00580at 125.906 kb on + strand, within AO356_00580at 125.906 kb on + strand, within AO356_00580at 125.906 kb on + strand, within AO356_00580at 125.906 kb on + strand, within AO356_00580at 125.906 kb on + strand, within AO356_00580at 125.906 kb on + strand, within AO356_00580at 125.906 kb on + strand, within AO356_00580at 125.906 kb on + strand, within AO356_00580at 125.906 kb on + strand, within AO356_00580at 125.906 kb on + strand, within AO356_00580at 125.907 kb on - strand, within AO356_00580at 125.907 kb on - strand, within AO356_00580at 125.907 kb on - strand, within AO356_00580at 125.907 kb on - strand, within AO356_00580at 125.907 kb on - strand, within AO356_00580at 125.907 kb on - strand, within AO356_00580at 125.907 kb on - strand, within AO356_00580at 125.907 kb on - strand, within AO356_00580at 125.907 kb on - strand, within AO356_00580at 125.907 kb on - strand, within AO356_00580at 125.907 kb on - strand, within AO356_00580at 126.097 kb on + strand, within AO356_00580at 126.097 kb on + strand, within AO356_00580at 126.097 kb on + strand, within AO356_00580at 126.098 kb on - strand, within AO356_00580at 126.184 kb on + strand, within AO356_00580at 126.277 kb on + strand, within AO356_00580at 126.277 kb on + strand, within AO356_00580at 126.277 kb on + strand, within AO356_00580at 126.494 kb on - strandat 126.527 kb on + strandat 126.527 kb on + strandat 126.527 kb on + strandat 126.528 kb on - strandat 126.528 kb on - strandat 126.528 kb on - strandat 126.528 kb on - strandat 126.528 kb on - strandat 126.528 kb on - strandat 126.528 kb on - strandat 126.528 kb on - strandat 126.528 kb on - strandat 126.996 kb on - strand, within AO356_00585at 127.008 kb on - strand, within AO356_00585at 127.026 kb on + strand, within AO356_00585at 127.027 kb on - strand, within AO356_00585at 127.027 kb on - strand, within AO356_00585at 127.085 kb on + strand, within AO356_00585at 127.085 kb on + strand, within AO356_00585at 127.085 kb on + strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.091 kb on + strand, within AO356_00585at 127.091 kb on + strand, within AO356_00585at 127.091 kb on + strand, within AO356_00585at 127.091 kb on + strand, within AO356_00585at 127.091 kb on + strand, within AO356_00585at 127.091 kb on + strand, within AO356_00585at 127.092 kb on - strand, within AO356_00585at 127.092 kb on - strand, within AO356_00585at 127.092 kb on - strand, within AO356_00585at 127.092 kb on - strand, within AO356_00585at 127.092 kb on - strand, within AO356_00585at 127.173 kb on + strand, within AO356_00585at 127.193 kb on + strand, within AO356_00585at 127.193 kb on + strand, within AO356_00585at 127.193 kb on + strand, within AO356_00585at 127.193 kb on + strand, within AO356_00585at 127.194 kb on - strand, within AO356_00585at 127.194 kb on - strand, within AO356_00585at 127.194 kb on - strand, within AO356_00585at 127.194 kb on - strand, within AO356_00585at 127.194 kb on - strand, within AO356_00585at 127.194 kb on - strand, within AO356_00585at 127.220 kb on + strand, within AO356_00585at 127.247 kb on + strand, within AO356_00585at 127.247 kb on + strand, within AO356_00585at 127.247 kb on + strandat 127.248 kb on - strand, within AO356_00585at 127.307 kb on + strand, within AO356_00585at 127.308 kb on - strand, within AO356_00585

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 1152 hrs
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123,804 + AO356_00570 0.45 +0.4
123,804 + AO356_00570 0.45 -0.7
123,847 - AO356_00570 0.51 +0.0
123,847 - AO356_00570 0.51 +0.6
123,847 - AO356_00570 0.51 +0.7
123,886 + AO356_00570 0.57 +1.0
123,886 + AO356_00570 0.57 +0.9
123,887 - AO356_00570 0.57 +1.6
123,887 - AO356_00570 0.57 +0.6
124,204 - -0.6
124,208 + +0.2
124,209 - +0.7
124,209 - -0.9
124,209 - +0.1
124,209 - +0.0
124,209 - +1.0
124,221 + +0.4
124,232 + -0.3
124,232 + -0.3
124,233 - +0.3
124,233 - +0.9
124,233 - +0.5
124,268 + -0.9
124,268 + -2.3
124,269 - -0.4
124,323 - AO356_00575 0.24 -2.3
124,323 - AO356_00575 0.24 -0.4
124,707 - -1.1
124,707 - +1.0
124,707 - +0.4
125,182 + AO356_00580 0.24 +0.1
125,182 + AO356_00580 0.24 +0.4
125,182 + AO356_00580 0.24 -0.5
125,183 - AO356_00580 0.24 +0.8
125,183 - AO356_00580 0.24 -0.9
125,183 - AO356_00580 0.24 -0.3
125,183 - AO356_00580 0.24 +0.1
125,183 - AO356_00580 0.24 -0.6
125,184 + AO356_00580 0.24 +1.4
125,185 - AO356_00580 0.24 +1.4
125,239 + AO356_00580 0.27 +0.1
125,273 - AO356_00580 0.29 +1.3
125,428 + AO356_00580 0.38 +0.4
125,429 - AO356_00580 0.38 -0.1
125,434 + AO356_00580 0.38 +0.9
125,434 + AO356_00580 0.38 +0.8
125,435 - AO356_00580 0.38 +0.6
125,477 + AO356_00580 0.41 +0.4
125,477 + AO356_00580 0.41 +0.3
125,597 + AO356_00580 0.48 +0.5
125,597 + AO356_00580 0.48 +1.8
125,597 + AO356_00580 0.48 +0.9
125,597 + AO356_00580 0.48 +1.7
125,598 - AO356_00580 0.48 +0.6
125,598 - AO356_00580 0.48 -0.4
125,598 - AO356_00580 0.48 +0.7
125,598 - AO356_00580 0.48 +0.9
125,598 - AO356_00580 0.48 +0.3
125,620 - AO356_00580 0.49 +0.2
125,671 + AO356_00580 0.52 -0.8
125,671 + AO356_00580 0.52 +1.2
125,671 + AO356_00580 0.52 +1.8
125,728 + AO356_00580 0.55 +0.8
125,728 + AO356_00580 0.55 -0.8
125,728 + AO356_00580 0.55 +0.7
125,729 - AO356_00580 0.55 +0.5
125,906 + AO356_00580 0.66 +0.0
125,906 + AO356_00580 0.66 +0.7
125,906 + AO356_00580 0.66 +1.2
125,906 + AO356_00580 0.66 +1.0
125,906 + AO356_00580 0.66 +1.0
125,906 + AO356_00580 0.66 +1.1
125,906 + AO356_00580 0.66 +1.8
125,906 + AO356_00580 0.66 +0.4
125,906 + AO356_00580 0.66 +0.3
125,906 + AO356_00580 0.66 +0.4
125,906 + AO356_00580 0.66 +0.5
125,907 - AO356_00580 0.66 -1.2
125,907 - AO356_00580 0.66 +1.2
125,907 - AO356_00580 0.66 +0.2
125,907 - AO356_00580 0.66 +0.7
125,907 - AO356_00580 0.66 -0.2
125,907 - AO356_00580 0.66 -0.2
125,907 - AO356_00580 0.66 -0.5
125,907 - AO356_00580 0.66 +0.2
125,907 - AO356_00580 0.66 +1.3
125,907 - AO356_00580 0.66 +1.6
125,907 - AO356_00580 0.66 +0.5
126,097 + AO356_00580 0.77 +0.7
126,097 + AO356_00580 0.77 +0.6
126,097 + AO356_00580 0.77 -0.3
126,098 - AO356_00580 0.77 +1.1
126,184 + AO356_00580 0.82 +0.5
126,277 + AO356_00580 0.87 +0.4
126,277 + AO356_00580 0.87 +1.1
126,277 + AO356_00580 0.87 +1.3
126,494 - -0.5
126,527 + -0.9
126,527 + -0.7
126,527 + +0.9
126,528 - +0.3
126,528 - +1.2
126,528 - +0.5
126,528 - +1.4
126,528 - +0.1
126,528 - -0.7
126,528 - -0.3
126,528 - +0.3
126,528 - +0.9
126,996 - AO356_00585 0.50 +0.9
127,008 - AO356_00585 0.52 -1.3
127,026 + AO356_00585 0.54 -0.6
127,027 - AO356_00585 0.54 +0.0
127,027 - AO356_00585 0.54 +0.1
127,085 + AO356_00585 0.61 -0.7
127,085 + AO356_00585 0.61 +0.2
127,085 + AO356_00585 0.61 -0.0
127,086 - AO356_00585 0.61 +0.3
127,086 - AO356_00585 0.61 -0.1
127,086 - AO356_00585 0.61 -0.0
127,086 - AO356_00585 0.61 -0.1
127,086 - AO356_00585 0.61 +1.2
127,086 - AO356_00585 0.61 +0.4
127,086 - AO356_00585 0.61 -0.7
127,086 - AO356_00585 0.61 +0.0
127,086 - AO356_00585 0.61 -0.1
127,091 + AO356_00585 0.61 -0.3
127,091 + AO356_00585 0.61 +0.2
127,091 + AO356_00585 0.61 +0.5
127,091 + AO356_00585 0.61 +0.1
127,091 + AO356_00585 0.61 +0.6
127,091 + AO356_00585 0.61 +1.4
127,092 - AO356_00585 0.62 -0.7
127,092 - AO356_00585 0.62 -0.0
127,092 - AO356_00585 0.62 +0.9
127,092 - AO356_00585 0.62 -0.1
127,092 - AO356_00585 0.62 -0.3
127,173 + AO356_00585 0.71 +0.6
127,193 + AO356_00585 0.73 +0.0
127,193 + AO356_00585 0.73 -0.8
127,193 + AO356_00585 0.73 +0.2
127,193 + AO356_00585 0.73 -0.6
127,194 - AO356_00585 0.73 +0.4
127,194 - AO356_00585 0.73 +0.7
127,194 - AO356_00585 0.73 -1.0
127,194 - AO356_00585 0.73 -0.5
127,194 - AO356_00585 0.73 +0.4
127,194 - AO356_00585 0.73 +1.4
127,220 + AO356_00585 0.76 -0.0
127,247 + AO356_00585 0.80 -0.1
127,247 + AO356_00585 0.80 +0.4
127,247 + +0.7
127,248 - AO356_00585 0.80 +0.1
127,307 + AO356_00585 0.86 -1.4
127,308 - AO356_00585 0.87 -0.2

Or see this region's nucleotide sequence