Experiment: Vanillyl Alcohol 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_77 and Pf6N2E2_78 overlap by 4 nucleotides Pf6N2E2_78 and Pf6N2E2_6100 are separated by 168 nucleotides Pf6N2E2_6100 and Pf6N2E2_6101 are separated by 61 nucleotides Pf6N2E2_6101 and Pf6N2E2_6102 are separated by 93 nucleotides Pf6N2E2_6102 and Pf6N2E2_79 are separated by 432 nucleotides
Pf6N2E2_77 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48), at 119,551 to 120,762
_77
Pf6N2E2_78 - Oxidoreductase, short chain dehydrogenase/reductase family, at 120,759 to 121,532
_78
Pf6N2E2_6100 - tRNA-Val-TAC, at 121,701 to 121,773
_6100
Pf6N2E2_6101 - tRNA-Asp-GTC, at 121,835 to 121,908
_6101
Pf6N2E2_6102 - tRNA-Asp-GTC, at 122,002 to 122,075
_6102
Pf6N2E2_79 - Mobile element protein, at 122,508 to 123,776
_79
Position (kb)
121
122 Strain fitness (log2 ratio)
-1
0
1
2 at 121.092 kb on + strand, within Pf6N2E2_78 at 121.159 kb on - strand, within Pf6N2E2_78 at 121.236 kb on + strand, within Pf6N2E2_78 at 121.236 kb on + strand, within Pf6N2E2_78 at 121.237 kb on - strand, within Pf6N2E2_78 at 121.237 kb on - strand, within Pf6N2E2_78 at 121.412 kb on - strand, within Pf6N2E2_78 at 121.421 kb on - strand, within Pf6N2E2_78 at 121.524 kb on + strand at 121.524 kb on + strand at 121.525 kb on - strand at 121.525 kb on - strand at 121.525 kb on - strand at 121.572 kb on + strand at 121.572 kb on + strand at 121.573 kb on - strand at 121.598 kb on + strand at 121.599 kb on - strand at 121.658 kb on - strand at 121.734 kb on + strand, within Pf6N2E2_6100 at 121.734 kb on + strand, within Pf6N2E2_6100 at 121.782 kb on + strand at 122.139 kb on + strand at 122.203 kb on + strand at 122.203 kb on + strand at 122.252 kb on - strand at 122.252 kb on - strand at 122.252 kb on - strand at 122.252 kb on - strand at 122.252 kb on - strand at 122.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillyl Alcohol 0.005 M remove 121,092 + Pf6N2E2_78 0.43 -0.8 121,159 - Pf6N2E2_78 0.52 +1.3 121,236 + Pf6N2E2_78 0.62 +0.3 121,236 + Pf6N2E2_78 0.62 -0.4 121,237 - Pf6N2E2_78 0.62 -0.7 121,237 - Pf6N2E2_78 0.62 -0.6 121,412 - Pf6N2E2_78 0.84 +0.8 121,421 - Pf6N2E2_78 0.86 +0.0 121,524 + +0.3 121,524 + +1.2 121,525 - +0.8 121,525 - -0.7 121,525 - +0.9 121,572 + +0.3 121,572 + +0.8 121,573 - -0.7 121,598 + +2.5 121,599 - -0.4 121,658 - -0.5 121,734 + Pf6N2E2_6100 0.45 -1.5 121,734 + Pf6N2E2_6100 0.45 -1.0 121,782 + -0.7 122,139 + -0.4 122,203 + -0.1 122,203 + +1.5 122,252 - -0.1 122,252 - -0.4 122,252 - +0.6 122,252 - +1.5 122,252 - +0.6 122,256 - +0.8
Or see this region's nucleotide sequence