Experiment: Vanillyl Alcohol 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2057 and Pf6N2E2_2058 are separated by 53 nucleotides Pf6N2E2_2058 and Pf6N2E2_2059 are separated by 53 nucleotides Pf6N2E2_2059 and Pf6N2E2_2060 are separated by 174 nucleotides
Pf6N2E2_2057 - Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes, at 2,445,939 to 2,447,585
_2057
Pf6N2E2_2058 - ChlD component of cobalt chelatase involved in B12 biosynthesis, at 2,447,639 to 2,448,250
_2058
Pf6N2E2_2059 - ChlI component of cobalt chelatase involved in B12 biosynthesis, at 2,448,304 to 2,449,308
_2059
Pf6N2E2_2060 - CobN component of cobalt chelatase involved in B12 biosynthesis, at 2,449,483 to 2,453,256
_2060
Position (kb)
2448
2449
2450 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2447.323 kb on + strand, within Pf6N2E2_2057 at 2447.323 kb on + strand, within Pf6N2E2_2057 at 2447.323 kb on + strand, within Pf6N2E2_2057 at 2447.517 kb on + strand at 2447.517 kb on + strand at 2447.537 kb on - strand at 2447.577 kb on + strand at 2447.616 kb on + strand at 2447.616 kb on + strand at 2447.617 kb on - strand at 2447.617 kb on - strand at 2447.617 kb on - strand at 2447.617 kb on - strand at 2447.635 kb on + strand at 2447.635 kb on + strand at 2447.635 kb on + strand at 2447.636 kb on - strand at 2447.636 kb on - strand at 2447.662 kb on + strand at 2447.663 kb on - strand at 2447.663 kb on - strand at 2447.671 kb on - strand at 2448.306 kb on - strand at 2449.001 kb on + strand, within Pf6N2E2_2059 at 2449.001 kb on + strand, within Pf6N2E2_2059 at 2449.002 kb on - strand, within Pf6N2E2_2059 at 2449.002 kb on - strand, within Pf6N2E2_2059 at 2449.652 kb on + strand at 2449.653 kb on - strand at 2449.653 kb on - strand at 2449.673 kb on + strand at 2449.673 kb on + strand at 2449.757 kb on + strand at 2449.758 kb on - strand at 2449.880 kb on + strand, within Pf6N2E2_2060 at 2449.880 kb on + strand, within Pf6N2E2_2060 at 2449.881 kb on - strand, within Pf6N2E2_2060 at 2449.881 kb on - strand, within Pf6N2E2_2060 at 2449.943 kb on + strand, within Pf6N2E2_2060 at 2449.943 kb on + strand, within Pf6N2E2_2060 at 2449.943 kb on + strand, within Pf6N2E2_2060 at 2449.943 kb on + strand, within Pf6N2E2_2060 at 2449.943 kb on + strand, within Pf6N2E2_2060 at 2449.944 kb on - strand, within Pf6N2E2_2060 at 2449.944 kb on - strand, within Pf6N2E2_2060 at 2449.946 kb on + strand, within Pf6N2E2_2060 at 2449.947 kb on - strand, within Pf6N2E2_2060
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillyl Alcohol 0.005 M remove 2,447,323 + Pf6N2E2_2057 0.84 +0.1 2,447,323 + Pf6N2E2_2057 0.84 -1.8 2,447,323 + Pf6N2E2_2057 0.84 +1.0 2,447,517 + -2.3 2,447,517 + -1.0 2,447,537 - -2.3 2,447,577 + +3.7 2,447,616 + -2.1 2,447,616 + -3.0 2,447,617 - +1.8 2,447,617 - -0.7 2,447,617 - -0.0 2,447,617 - +0.2 2,447,635 + -0.5 2,447,635 + -0.8 2,447,635 + -1.5 2,447,636 - +1.3 2,447,636 - -0.1 2,447,662 + -0.3 2,447,663 - +0.6 2,447,663 - -0.8 2,447,671 - +0.6 2,448,306 - -0.1 2,449,001 + Pf6N2E2_2059 0.69 +0.4 2,449,001 + Pf6N2E2_2059 0.69 -0.6 2,449,002 - Pf6N2E2_2059 0.69 -1.2 2,449,002 - Pf6N2E2_2059 0.69 -0.9 2,449,652 + -0.8 2,449,653 - +0.0 2,449,653 - -1.2 2,449,673 + +0.0 2,449,673 + -0.2 2,449,757 + -0.8 2,449,758 - -0.3 2,449,880 + Pf6N2E2_2060 0.11 -0.2 2,449,880 + Pf6N2E2_2060 0.11 -0.3 2,449,881 - Pf6N2E2_2060 0.11 -0.7 2,449,881 - Pf6N2E2_2060 0.11 -1.2 2,449,943 + Pf6N2E2_2060 0.12 +1.4 2,449,943 + Pf6N2E2_2060 0.12 -0.0 2,449,943 + Pf6N2E2_2060 0.12 -0.2 2,449,943 + Pf6N2E2_2060 0.12 +0.7 2,449,943 + Pf6N2E2_2060 0.12 -0.8 2,449,944 - Pf6N2E2_2060 0.12 +0.0 2,449,944 - Pf6N2E2_2060 0.12 -0.4 2,449,946 + Pf6N2E2_2060 0.12 -1.4 2,449,947 - Pf6N2E2_2060 0.12 +0.1
Or see this region's nucleotide sequence