Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1723

Experiment: Vanillyl Alcohol 0.005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1720 and Pf6N2E2_1721 overlap by 4 nucleotidesPf6N2E2_1721 and Pf6N2E2_1722 overlap by 12 nucleotidesPf6N2E2_1722 and Pf6N2E2_1723 overlap by 8 nucleotidesPf6N2E2_1723 and Pf6N2E2_1724 are separated by 9 nucleotidesPf6N2E2_1724 and Pf6N2E2_1725 are separated by 4 nucleotides Pf6N2E2_1720 - hypothetical protein, at 2,029,476 to 2,029,616 _1720 Pf6N2E2_1721 - hypothetical protein, at 2,029,613 to 2,029,729 _1721 Pf6N2E2_1722 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157), at 2,029,718 to 2,030,569 _1722 Pf6N2E2_1723 - Transcriptional regulator, TetR family, at 2,030,562 to 2,031,176 _1723 Pf6N2E2_1724 - DNA-binding response regulator, LuxR family, at 2,031,186 to 2,031,821 _1724 Pf6N2E2_1725 - Sensory box histidine kinase, at 2,031,826 to 2,034,111 _1725 Position (kb) 2030 2031 2032Strain fitness (log2 ratio) -3 -2 -1 0 1at 2029.570 kb on + strand, within Pf6N2E2_1720at 2029.571 kb on - strand, within Pf6N2E2_1720at 2029.577 kb on + strand, within Pf6N2E2_1720at 2029.614 kb on + strandat 2029.729 kb on + strandat 2029.729 kb on + strandat 2029.729 kb on + strandat 2029.729 kb on + strandat 2029.729 kb on + strandat 2029.730 kb on - strandat 2029.730 kb on - strandat 2029.730 kb on - strandat 2029.730 kb on - strandat 2029.730 kb on - strandat 2029.733 kb on - strandat 2030.459 kb on + strand, within Pf6N2E2_1722at 2030.459 kb on + strand, within Pf6N2E2_1722at 2030.459 kb on + strand, within Pf6N2E2_1722at 2030.460 kb on - strand, within Pf6N2E2_1722at 2030.460 kb on - strand, within Pf6N2E2_1722at 2030.460 kb on - strand, within Pf6N2E2_1722at 2030.460 kb on - strand, within Pf6N2E2_1722at 2030.484 kb on - strandat 2030.691 kb on + strand, within Pf6N2E2_1723at 2030.691 kb on + strand, within Pf6N2E2_1723at 2030.937 kb on + strand, within Pf6N2E2_1723at 2031.115 kb on + strandat 2031.116 kb on - strandat 2031.116 kb on - strandat 2031.344 kb on - strand, within Pf6N2E2_1724at 2031.793 kb on + strandat 2031.794 kb on - strandat 2031.794 kb on - strandat 2031.794 kb on - strandat 2031.794 kb on - strandat 2031.794 kb on - strandat 2031.794 kb on - strandat 2031.794 kb on - strandat 2031.794 kb on - strandat 2031.794 kb on - strandat 2031.794 kb on - strandat 2031.827 kb on + strandat 2031.828 kb on - strandat 2031.992 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillyl Alcohol 0.005 M
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2,029,570 + Pf6N2E2_1720 0.67 +1.2
2,029,571 - Pf6N2E2_1720 0.67 -0.9
2,029,577 + Pf6N2E2_1720 0.72 -1.1
2,029,614 + -1.6
2,029,729 + +0.1
2,029,729 + -1.1
2,029,729 + +0.3
2,029,729 + +0.2
2,029,729 + -1.1
2,029,730 - -1.6
2,029,730 - -0.6
2,029,730 - +0.7
2,029,730 - +1.3
2,029,730 - +0.7
2,029,733 - +0.7
2,030,459 + Pf6N2E2_1722 0.87 -0.5
2,030,459 + Pf6N2E2_1722 0.87 -0.0
2,030,459 + Pf6N2E2_1722 0.87 +0.5
2,030,460 - Pf6N2E2_1722 0.87 +0.6
2,030,460 - Pf6N2E2_1722 0.87 -1.0
2,030,460 - Pf6N2E2_1722 0.87 -0.1
2,030,460 - Pf6N2E2_1722 0.87 +0.7
2,030,484 - -0.4
2,030,691 + Pf6N2E2_1723 0.21 +0.2
2,030,691 + Pf6N2E2_1723 0.21 -1.0
2,030,937 + Pf6N2E2_1723 0.61 -1.0
2,031,115 + -1.9
2,031,116 - +0.9
2,031,116 - +1.1
2,031,344 - Pf6N2E2_1724 0.25 +0.1
2,031,793 + -2.9
2,031,794 - -0.6
2,031,794 - +0.5
2,031,794 - -0.5
2,031,794 - -0.1
2,031,794 - -0.0
2,031,794 - +0.7
2,031,794 - +0.7
2,031,794 - -0.3
2,031,794 - +0.0
2,031,794 - -0.0
2,031,827 + -0.5
2,031,828 - +0.1
2,031,992 + +0.5

Or see this region's nucleotide sequence