Experiment: Vanillyl Alcohol 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1720 and Pf6N2E2_1721 overlap by 4 nucleotides Pf6N2E2_1721 and Pf6N2E2_1722 overlap by 12 nucleotides Pf6N2E2_1722 and Pf6N2E2_1723 overlap by 8 nucleotides Pf6N2E2_1723 and Pf6N2E2_1724 are separated by 9 nucleotides Pf6N2E2_1724 and Pf6N2E2_1725 are separated by 4 nucleotides
Pf6N2E2_1720 - hypothetical protein, at 2,029,476 to 2,029,616
_1720
Pf6N2E2_1721 - hypothetical protein, at 2,029,613 to 2,029,729
_1721
Pf6N2E2_1722 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157), at 2,029,718 to 2,030,569
_1722
Pf6N2E2_1723 - Transcriptional regulator, TetR family, at 2,030,562 to 2,031,176
_1723
Pf6N2E2_1724 - DNA-binding response regulator, LuxR family, at 2,031,186 to 2,031,821
_1724
Pf6N2E2_1725 - Sensory box histidine kinase, at 2,031,826 to 2,034,111
_1725
Position (kb)
2030
2031
2032 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2029.570 kb on + strand, within Pf6N2E2_1720 at 2029.571 kb on - strand, within Pf6N2E2_1720 at 2029.577 kb on + strand, within Pf6N2E2_1720 at 2029.614 kb on + strand at 2029.729 kb on + strand at 2029.729 kb on + strand at 2029.729 kb on + strand at 2029.729 kb on + strand at 2029.729 kb on + strand at 2029.730 kb on - strand at 2029.730 kb on - strand at 2029.730 kb on - strand at 2029.730 kb on - strand at 2029.730 kb on - strand at 2029.733 kb on - strand at 2030.459 kb on + strand, within Pf6N2E2_1722 at 2030.459 kb on + strand, within Pf6N2E2_1722 at 2030.459 kb on + strand, within Pf6N2E2_1722 at 2030.460 kb on - strand, within Pf6N2E2_1722 at 2030.460 kb on - strand, within Pf6N2E2_1722 at 2030.460 kb on - strand, within Pf6N2E2_1722 at 2030.460 kb on - strand, within Pf6N2E2_1722 at 2030.484 kb on - strand at 2030.691 kb on + strand, within Pf6N2E2_1723 at 2030.691 kb on + strand, within Pf6N2E2_1723 at 2030.937 kb on + strand, within Pf6N2E2_1723 at 2031.115 kb on + strand at 2031.116 kb on - strand at 2031.116 kb on - strand at 2031.344 kb on - strand, within Pf6N2E2_1724 at 2031.793 kb on + strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.827 kb on + strand at 2031.828 kb on - strand at 2031.992 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillyl Alcohol 0.005 M remove 2,029,570 + Pf6N2E2_1720 0.67 +1.2 2,029,571 - Pf6N2E2_1720 0.67 -0.9 2,029,577 + Pf6N2E2_1720 0.72 -1.1 2,029,614 + -1.6 2,029,729 + +0.1 2,029,729 + -1.1 2,029,729 + +0.3 2,029,729 + +0.2 2,029,729 + -1.1 2,029,730 - -1.6 2,029,730 - -0.6 2,029,730 - +0.7 2,029,730 - +1.3 2,029,730 - +0.7 2,029,733 - +0.7 2,030,459 + Pf6N2E2_1722 0.87 -0.5 2,030,459 + Pf6N2E2_1722 0.87 -0.0 2,030,459 + Pf6N2E2_1722 0.87 +0.5 2,030,460 - Pf6N2E2_1722 0.87 +0.6 2,030,460 - Pf6N2E2_1722 0.87 -1.0 2,030,460 - Pf6N2E2_1722 0.87 -0.1 2,030,460 - Pf6N2E2_1722 0.87 +0.7 2,030,484 - -0.4 2,030,691 + Pf6N2E2_1723 0.21 +0.2 2,030,691 + Pf6N2E2_1723 0.21 -1.0 2,030,937 + Pf6N2E2_1723 0.61 -1.0 2,031,115 + -1.9 2,031,116 - +0.9 2,031,116 - +1.1 2,031,344 - Pf6N2E2_1724 0.25 +0.1 2,031,793 + -2.9 2,031,794 - -0.6 2,031,794 - +0.5 2,031,794 - -0.5 2,031,794 - -0.1 2,031,794 - -0.0 2,031,794 - +0.7 2,031,794 - +0.7 2,031,794 - -0.3 2,031,794 - +0.0 2,031,794 - -0.0 2,031,827 + -0.5 2,031,828 - +0.1 2,031,992 + +0.5
Or see this region's nucleotide sequence