Strain Fitness in Pantoea sp. MT58 around IAI47_18935

Experiment: Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_18925 and IAI47_18930 are separated by 96 nucleotidesIAI47_18930 and IAI47_18935 overlap by 1 nucleotidesIAI47_18935 and IAI47_18940 overlap by 4 nucleotidesIAI47_18940 and IAI47_18945 are separated by 25 nucleotides IAI47_18925: IAI47_18925 - LysR family transcriptional regulator, at 22,245 to 23,138 _18925 IAI47_18930: IAI47_18930 - carboxymuconolactone decarboxylase family protein, at 23,235 to 23,540 _18930 IAI47_18935: IAI47_18935 - tautomerase family protein, at 23,540 to 23,929 _18935 IAI47_18940: IAI47_18940 - DUF4865 family protein, at 23,926 to 24,453 _18940 IAI47_18945: IAI47_18945 - RidA family protein, at 24,479 to 24,856 _18945 Position (kb) 23 24Strain fitness (log2 ratio) -2 -1 0 1 2 3at 22.729 kb on - strand, within IAI47_18925at 22.729 kb on - strand, within IAI47_18925at 22.841 kb on + strand, within IAI47_18925at 22.841 kb on + strand, within IAI47_18925at 22.842 kb on - strand, within IAI47_18925at 22.842 kb on - strand, within IAI47_18925at 22.842 kb on - strand, within IAI47_18925at 22.845 kb on + strand, within IAI47_18925at 22.845 kb on + strand, within IAI47_18925at 22.845 kb on + strand, within IAI47_18925at 22.845 kb on + strand, within IAI47_18925at 22.846 kb on - strand, within IAI47_18925at 22.846 kb on - strand, within IAI47_18925at 22.918 kb on + strand, within IAI47_18925at 22.919 kb on - strand, within IAI47_18925at 22.925 kb on + strand, within IAI47_18925at 22.926 kb on - strand, within IAI47_18925at 22.926 kb on - strand, within IAI47_18925at 22.926 kb on - strand, within IAI47_18925at 23.132 kb on + strandat 23.132 kb on + strandat 23.132 kb on + strandat 23.149 kb on + strandat 23.197 kb on + strandat 23.203 kb on + strandat 23.203 kb on + strandat 23.203 kb on + strandat 23.204 kb on - strandat 23.204 kb on - strandat 23.204 kb on - strandat 23.204 kb on - strandat 23.204 kb on - strandat 23.204 kb on - strandat 23.204 kb on - strandat 23.204 kb on - strandat 23.318 kb on + strand, within IAI47_18930at 23.318 kb on + strand, within IAI47_18930at 23.319 kb on - strand, within IAI47_18930at 23.319 kb on - strand, within IAI47_18930at 23.468 kb on + strand, within IAI47_18930at 23.468 kb on + strand, within IAI47_18930at 23.469 kb on - strand, within IAI47_18930at 23.469 kb on - strand, within IAI47_18930at 23.469 kb on - strand, within IAI47_18930at 23.485 kb on - strand, within IAI47_18930at 23.485 kb on - strand, within IAI47_18930at 23.485 kb on - strand, within IAI47_18930at 23.531 kb on + strandat 23.573 kb on + strandat 23.574 kb on - strandat 23.593 kb on + strand, within IAI47_18935at 23.594 kb on - strand, within IAI47_18935at 23.607 kb on + strand, within IAI47_18935at 23.607 kb on + strand, within IAI47_18935at 23.607 kb on + strand, within IAI47_18935at 23.607 kb on + strand, within IAI47_18935at 23.608 kb on - strand, within IAI47_18935at 23.608 kb on - strand, within IAI47_18935at 23.608 kb on - strand, within IAI47_18935at 23.695 kb on - strand, within IAI47_18935at 23.701 kb on + strand, within IAI47_18935at 23.708 kb on + strand, within IAI47_18935at 23.708 kb on + strand, within IAI47_18935at 23.709 kb on - strand, within IAI47_18935at 23.709 kb on - strand, within IAI47_18935at 23.709 kb on - strand, within IAI47_18935at 23.795 kb on + strand, within IAI47_18935at 23.795 kb on + strand, within IAI47_18935at 23.860 kb on + strand, within IAI47_18935at 23.860 kb on + strand, within IAI47_18935at 23.860 kb on + strand, within IAI47_18935at 23.861 kb on - strand, within IAI47_18935at 23.925 kb on + strandat 23.942 kb on - strandat 23.949 kb on + strandat 23.965 kb on + strandat 23.965 kb on + strandat 23.965 kb on + strandat 23.965 kb on + strandat 23.965 kb on + strandat 23.966 kb on - strandat 23.970 kb on + strandat 23.971 kb on - strandat 23.971 kb on - strandat 23.971 kb on - strandat 24.046 kb on + strand, within IAI47_18940at 24.046 kb on + strand, within IAI47_18940at 24.046 kb on + strand, within IAI47_18940at 24.046 kb on + strand, within IAI47_18940at 24.047 kb on - strand, within IAI47_18940at 24.047 kb on - strand, within IAI47_18940at 24.047 kb on - strand, within IAI47_18940at 24.091 kb on + strand, within IAI47_18940at 24.091 kb on + strand, within IAI47_18940at 24.092 kb on - strand, within IAI47_18940at 24.092 kb on - strand, within IAI47_18940at 24.103 kb on + strand, within IAI47_18940at 24.103 kb on + strand, within IAI47_18940at 24.104 kb on - strand, within IAI47_18940at 24.104 kb on - strand, within IAI47_18940at 24.104 kb on - strand, within IAI47_18940at 24.126 kb on + strand, within IAI47_18940at 24.127 kb on - strand, within IAI47_18940at 24.297 kb on + strand, within IAI47_18940at 24.297 kb on + strand, within IAI47_18940at 24.297 kb on + strand, within IAI47_18940at 24.297 kb on + strand, within IAI47_18940at 24.297 kb on + strand, within IAI47_18940at 24.298 kb on - strand, within IAI47_18940at 24.320 kb on + strand, within IAI47_18940at 24.320 kb on + strand, within IAI47_18940at 24.320 kb on + strand, within IAI47_18940at 24.320 kb on + strand, within IAI47_18940at 24.320 kb on + strand, within IAI47_18940at 24.320 kb on + strand, within IAI47_18940at 24.320 kb on + strand, within IAI47_18940at 24.321 kb on - strand, within IAI47_18940at 24.321 kb on - strand, within IAI47_18940at 24.321 kb on - strand, within IAI47_18940at 24.354 kb on - strand, within IAI47_18940at 24.354 kb on - strand, within IAI47_18940at 24.354 kb on - strand, within IAI47_18940at 24.354 kb on - strand, within IAI47_18940at 24.400 kb on + strand, within IAI47_18940at 24.413 kb on - strandat 24.573 kb on + strand, within IAI47_18945at 24.573 kb on + strand, within IAI47_18945at 24.573 kb on + strand, within IAI47_18945at 24.573 kb on + strand, within IAI47_18945at 24.573 kb on + strand, within IAI47_18945at 24.574 kb on - strand, within IAI47_18945at 24.574 kb on - strand, within IAI47_18945at 24.574 kb on - strand, within IAI47_18945at 24.574 kb on - strand, within IAI47_18945at 24.574 kb on - strand, within IAI47_18945at 24.574 kb on - strand, within IAI47_18945at 24.577 kb on + strand, within IAI47_18945at 24.578 kb on - strand, within IAI47_18945at 24.578 kb on - strand, within IAI47_18945at 24.578 kb on - strand, within IAI47_18945at 24.578 kb on - strand, within IAI47_18945at 24.578 kb on - strand, within IAI47_18945at 24.583 kb on - strand, within IAI47_18945at 24.583 kb on - strand, within IAI47_18945at 24.587 kb on + strand, within IAI47_18945at 24.587 kb on + strand, within IAI47_18945at 24.587 kb on + strand, within IAI47_18945at 24.587 kb on + strand, within IAI47_18945at 24.587 kb on + strand, within IAI47_18945at 24.587 kb on + strand, within IAI47_18945at 24.588 kb on - strand, within IAI47_18945at 24.588 kb on - strand, within IAI47_18945at 24.626 kb on - strand, within IAI47_18945at 24.626 kb on - strand, within IAI47_18945at 24.629 kb on + strand, within IAI47_18945at 24.629 kb on + strand, within IAI47_18945at 24.629 kb on + strand, within IAI47_18945at 24.630 kb on - strand, within IAI47_18945at 24.630 kb on - strand, within IAI47_18945at 24.630 kb on - strand, within IAI47_18945at 24.630 kb on - strand, within IAI47_18945at 24.630 kb on - strand, within IAI47_18945at 24.661 kb on + strand, within IAI47_18945at 24.661 kb on + strand, within IAI47_18945at 24.661 kb on + strand, within IAI47_18945at 24.661 kb on + strand, within IAI47_18945at 24.661 kb on + strand, within IAI47_18945at 24.661 kb on + strand, within IAI47_18945at 24.661 kb on + strand, within IAI47_18945at 24.661 kb on + strand, within IAI47_18945at 24.662 kb on - strand, within IAI47_18945at 24.662 kb on - strand, within IAI47_18945at 24.662 kb on - strand, within IAI47_18945at 24.679 kb on + strand, within IAI47_18945at 24.679 kb on + strand, within IAI47_18945at 24.679 kb on + strand, within IAI47_18945at 24.679 kb on + strand, within IAI47_18945at 24.679 kb on + strand, within IAI47_18945at 24.679 kb on + strand, within IAI47_18945at 24.680 kb on - strand, within IAI47_18945at 24.680 kb on - strand, within IAI47_18945at 24.701 kb on - strand, within IAI47_18945at 24.701 kb on - strand, within IAI47_18945at 24.701 kb on - strand, within IAI47_18945at 24.721 kb on + strand, within IAI47_18945at 24.722 kb on - strand, within IAI47_18945at 24.768 kb on + strand, within IAI47_18945at 24.768 kb on + strand, within IAI47_18945at 24.769 kb on - strand, within IAI47_18945at 24.769 kb on - strand, within IAI47_18945at 24.769 kb on - strand, within IAI47_18945at 24.787 kb on + strand, within IAI47_18945at 24.787 kb on + strand, within IAI47_18945at 24.801 kb on + strand, within IAI47_18945at 24.801 kb on + strand, within IAI47_18945at 24.801 kb on + strand, within IAI47_18945at 24.801 kb on + strand, within IAI47_18945at 24.801 kb on + strandat 24.801 kb on + strand, within IAI47_18945at 24.801 kb on + strand, within IAI47_18945at 24.801 kb on + strand, within IAI47_18945at 24.801 kb on + strand, within IAI47_18945at 24.801 kb on + strand, within IAI47_18945at 24.801 kb on + strand, within IAI47_18945at 24.801 kb on + strand, within IAI47_18945at 24.802 kb on - strand, within IAI47_18945at 24.802 kb on - strand, within IAI47_18945at 24.802 kb on - strand, within IAI47_18945at 24.802 kb on - strand, within IAI47_18945at 24.802 kb on - strand, within IAI47_18945at 24.802 kb on - strand, within IAI47_18945at 24.802 kb on - strand, within IAI47_18945at 24.802 kb on - strand, within IAI47_18945at 24.802 kb on - strand, within IAI47_18945at 24.802 kb on - strand, within IAI47_18945at 24.856 kb on + strandat 24.856 kb on + strandat 24.856 kb on + strandat 24.856 kb on + strandat 24.856 kb on + strandat 24.856 kb on + strandat 24.856 kb on + strandat 24.856 kb on + strandat 24.856 kb on + strandat 24.857 kb on - strandat 24.857 kb on - strandat 24.857 kb on - strandat 24.857 kb on - strandat 24.857 kb on - strandat 24.857 kb on - strandat 24.871 kb on + strandat 24.872 kb on - strandat 24.872 kb on - strandat 24.887 kb on + strandat 24.887 kb on + strandat 24.887 kb on + strandat 24.888 kb on - strandat 24.888 kb on - strandat 24.888 kb on - strandat 24.888 kb on - strandat 24.890 kb on + strandat 24.890 kb on + strandat 24.891 kb on - strandat 24.925 kb on + strandat 24.926 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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22,729 - IAI47_18925 0.54 +1.8
22,729 - IAI47_18925 0.54 +1.1
22,841 + IAI47_18925 0.67 -1.3
22,841 + IAI47_18925 0.67 -1.1
22,842 - IAI47_18925 0.67 -0.1
22,842 - IAI47_18925 0.67 +0.1
22,842 - IAI47_18925 0.67 +0.9
22,845 + IAI47_18925 0.67 -1.2
22,845 + IAI47_18925 0.67 +0.6
22,845 + IAI47_18925 0.67 -0.4
22,845 + IAI47_18925 0.67 +0.2
22,846 - IAI47_18925 0.67 +0.3
22,846 - IAI47_18925 0.67 +1.5
22,918 + IAI47_18925 0.75 +0.6
22,919 - IAI47_18925 0.75 +1.0
22,925 + IAI47_18925 0.76 -0.8
22,926 - IAI47_18925 0.76 -0.1
22,926 - IAI47_18925 0.76 +0.3
22,926 - IAI47_18925 0.76 +2.2
23,132 + +0.3
23,132 + +2.9
23,132 + +1.2
23,149 + +0.1
23,197 + +1.6
23,203 + +1.1
23,203 + +0.6
23,203 + +1.1
23,204 - -0.1
23,204 - +1.2
23,204 - +2.0
23,204 - -0.2
23,204 - -0.9
23,204 - -1.6
23,204 - +0.6
23,204 - -0.1
23,318 + IAI47_18930 0.27 +0.5
23,318 + IAI47_18930 0.27 +0.3
23,319 - IAI47_18930 0.27 -0.5
23,319 - IAI47_18930 0.27 +1.8
23,468 + IAI47_18930 0.76 +1.9
23,468 + IAI47_18930 0.76 -0.6
23,469 - IAI47_18930 0.76 +2.2
23,469 - IAI47_18930 0.76 -2.4
23,469 - IAI47_18930 0.76 +1.9
23,485 - IAI47_18930 0.82 +1.3
23,485 - IAI47_18930 0.82 +2.2
23,485 - IAI47_18930 0.82 +1.6
23,531 + +0.1
23,573 + -0.4
23,574 - +0.8
23,593 + IAI47_18935 0.14 +0.3
23,594 - IAI47_18935 0.14 -0.5
23,607 + IAI47_18935 0.17 -1.1
23,607 + IAI47_18935 0.17 +0.6
23,607 + IAI47_18935 0.17 +1.7
23,607 + IAI47_18935 0.17 +0.4
23,608 - IAI47_18935 0.17 -0.2
23,608 - IAI47_18935 0.17 +0.2
23,608 - IAI47_18935 0.17 -0.1
23,695 - IAI47_18935 0.40 +2.2
23,701 + IAI47_18935 0.41 +0.4
23,708 + IAI47_18935 0.43 +1.2
23,708 + IAI47_18935 0.43 -0.2
23,709 - IAI47_18935 0.43 -0.0
23,709 - IAI47_18935 0.43 -0.4
23,709 - IAI47_18935 0.43 +0.3
23,795 + IAI47_18935 0.65 +1.4
23,795 + IAI47_18935 0.65 +3.5
23,860 + IAI47_18935 0.82 +0.1
23,860 + IAI47_18935 0.82 +0.6
23,860 + IAI47_18935 0.82 -0.4
23,861 - IAI47_18935 0.82 +0.4
23,925 + +0.9
23,942 - +1.2
23,949 + -0.2
23,965 + +0.2
23,965 + +0.6
23,965 + +1.6
23,965 + -0.8
23,965 + +1.1
23,966 - -1.5
23,970 + +1.2
23,971 - +0.5
23,971 - -1.9
23,971 - -0.4
24,046 + IAI47_18940 0.23 -0.0
24,046 + IAI47_18940 0.23 -1.1
24,046 + IAI47_18940 0.23 -0.4
24,046 + IAI47_18940 0.23 +2.2
24,047 - IAI47_18940 0.23 -0.4
24,047 - IAI47_18940 0.23 +0.2
24,047 - IAI47_18940 0.23 -1.0
24,091 + IAI47_18940 0.31 -0.6
24,091 + IAI47_18940 0.31 +0.1
24,092 - IAI47_18940 0.31 +0.6
24,092 - IAI47_18940 0.31 -1.5
24,103 + IAI47_18940 0.34 +2.1
24,103 + IAI47_18940 0.34 +0.1
24,104 - IAI47_18940 0.34 -1.3
24,104 - IAI47_18940 0.34 -1.6
24,104 - IAI47_18940 0.34 -0.1
24,126 + IAI47_18940 0.38 +0.4
24,127 - IAI47_18940 0.38 +0.2
24,297 + IAI47_18940 0.70 -0.3
24,297 + IAI47_18940 0.70 -1.5
24,297 + IAI47_18940 0.70 +1.2
24,297 + IAI47_18940 0.70 -1.0
24,297 + IAI47_18940 0.70 +1.2
24,298 - IAI47_18940 0.70 -1.6
24,320 + IAI47_18940 0.75 +1.2
24,320 + IAI47_18940 0.75 -1.0
24,320 + IAI47_18940 0.75 +1.5
24,320 + IAI47_18940 0.75 -0.6
24,320 + IAI47_18940 0.75 +0.8
24,320 + IAI47_18940 0.75 -0.4
24,320 + IAI47_18940 0.75 +1.9
24,321 - IAI47_18940 0.75 -1.3
24,321 - IAI47_18940 0.75 +1.2
24,321 - IAI47_18940 0.75 +0.6
24,354 - IAI47_18940 0.81 -1.3
24,354 - IAI47_18940 0.81 -0.2
24,354 - IAI47_18940 0.81 -1.1
24,354 - IAI47_18940 0.81 -0.3
24,400 + IAI47_18940 0.90 -1.9
24,413 - -0.8
24,573 + IAI47_18945 0.25 -0.1
24,573 + IAI47_18945 0.25 -0.4
24,573 + IAI47_18945 0.25 -0.0
24,573 + IAI47_18945 0.25 +0.4
24,573 + IAI47_18945 0.25 +1.0
24,574 - IAI47_18945 0.25 +0.3
24,574 - IAI47_18945 0.25 +0.9
24,574 - IAI47_18945 0.25 -1.1
24,574 - IAI47_18945 0.25 +1.8
24,574 - IAI47_18945 0.25 -1.5
24,574 - IAI47_18945 0.25 -0.1
24,577 + IAI47_18945 0.26 +0.6
24,578 - IAI47_18945 0.26 +0.9
24,578 - IAI47_18945 0.26 +2.2
24,578 - IAI47_18945 0.26 +0.8
24,578 - IAI47_18945 0.26 +1.3
24,578 - IAI47_18945 0.26 +1.0
24,583 - IAI47_18945 0.28 +0.5
24,583 - IAI47_18945 0.28 +1.5
24,587 + IAI47_18945 0.29 +2.2
24,587 + IAI47_18945 0.29 -0.3
24,587 + IAI47_18945 0.29 +0.0
24,587 + IAI47_18945 0.29 +0.6
24,587 + IAI47_18945 0.29 -0.1
24,587 + IAI47_18945 0.29 -0.8
24,588 - IAI47_18945 0.29 -1.7
24,588 - IAI47_18945 0.29 +0.6
24,626 - IAI47_18945 0.39 -0.3
24,626 - IAI47_18945 0.39 +2.4
24,629 + IAI47_18945 0.40 +0.5
24,629 + IAI47_18945 0.40 +0.2
24,629 + IAI47_18945 0.40 +1.9
24,630 - IAI47_18945 0.40 -0.4
24,630 - IAI47_18945 0.40 +1.6
24,630 - IAI47_18945 0.40 +0.2
24,630 - IAI47_18945 0.40 +0.6
24,630 - IAI47_18945 0.40 +0.2
24,661 + IAI47_18945 0.48 +0.2
24,661 + IAI47_18945 0.48 +2.6
24,661 + IAI47_18945 0.48 -0.9
24,661 + IAI47_18945 0.48 +0.0
24,661 + IAI47_18945 0.48 -1.7
24,661 + IAI47_18945 0.48 -1.8
24,661 + IAI47_18945 0.48 +0.1
24,661 + IAI47_18945 0.48 -0.8
24,662 - IAI47_18945 0.48 -1.1
24,662 - IAI47_18945 0.48 -1.6
24,662 - IAI47_18945 0.48 +1.0
24,679 + IAI47_18945 0.53 +1.5
24,679 + IAI47_18945 0.53 -0.2
24,679 + IAI47_18945 0.53 -0.4
24,679 + IAI47_18945 0.53 -2.1
24,679 + IAI47_18945 0.53 +1.0
24,679 + IAI47_18945 0.53 -1.6
24,680 - IAI47_18945 0.53 -1.3
24,680 - IAI47_18945 0.53 -0.1
24,701 - IAI47_18945 0.59 -1.6
24,701 - IAI47_18945 0.59 +1.3
24,701 - IAI47_18945 0.59 -1.1
24,721 + IAI47_18945 0.64 +2.2
24,722 - IAI47_18945 0.64 -0.7
24,768 + IAI47_18945 0.76 -0.1
24,768 + IAI47_18945 0.76 -0.1
24,769 - IAI47_18945 0.77 +2.8
24,769 - IAI47_18945 0.77 -0.1
24,769 - IAI47_18945 0.77 +2.2
24,787 + IAI47_18945 0.81 +0.2
24,787 + IAI47_18945 0.81 -0.2
24,801 + IAI47_18945 0.85 +2.2
24,801 + IAI47_18945 0.85 -0.4
24,801 + IAI47_18945 0.85 +1.0
24,801 + IAI47_18945 0.85 +0.2
24,801 + +2.2
24,801 + IAI47_18945 0.85 -0.3
24,801 + IAI47_18945 0.85 +0.6
24,801 + IAI47_18945 0.85 +1.3
24,801 + IAI47_18945 0.85 -1.3
24,801 + IAI47_18945 0.85 +0.4
24,801 + IAI47_18945 0.85 -0.6
24,801 + IAI47_18945 0.85 -0.1
24,802 - IAI47_18945 0.85 -0.4
24,802 - IAI47_18945 0.85 -0.1
24,802 - IAI47_18945 0.85 +0.6
24,802 - IAI47_18945 0.85 +1.2
24,802 - IAI47_18945 0.85 +0.9
24,802 - IAI47_18945 0.85 +0.6
24,802 - IAI47_18945 0.85 -0.6
24,802 - IAI47_18945 0.85 -1.1
24,802 - IAI47_18945 0.85 +1.2
24,802 - IAI47_18945 0.85 +1.1
24,856 + +1.6
24,856 + -0.8
24,856 + +1.5
24,856 + +0.2
24,856 + -1.3
24,856 + +0.8
24,856 + -1.4
24,856 + -1.9
24,856 + +0.4
24,857 - +0.2
24,857 - -0.7
24,857 - -2.5
24,857 - -1.0
24,857 - +0.2
24,857 - -1.5
24,871 + -0.1
24,872 - -1.4
24,872 - +0.2
24,887 + -0.2
24,887 + -0.4
24,887 + -0.4
24,888 - +1.8
24,888 - -0.1
24,888 - +0.5
24,888 - +0.2
24,890 + +0.4
24,890 + -0.3
24,891 - +1.2
24,925 + -0.1
24,926 - +0.7

Or see this region's nucleotide sequence