Strain Fitness in Pantoea sp. MT58 around IAI47_15445

Experiment: Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,249,550	-				+0.5
3,249,555	-				+0.8
3,249,603	+		IAI47_15440	0.13	+1.7
3,249,603	+		IAI47_15440	0.13	-1.0
3,249,603	+		IAI47_15440	0.13	-0.1
3,249,603	+		IAI47_15440	0.13	-2.8
3,249,603	+		IAI47_15440	0.13	-1.1
3,249,603	+		IAI47_15440	0.13	-0.5
3,249,604	-		IAI47_15440	0.13	+0.7
3,249,604	-		IAI47_15440	0.13	-1.6
3,249,604	-		IAI47_15440	0.13	-1.5
3,249,604	-		IAI47_15440	0.13	-0.9
3,249,604	-		IAI47_15440	0.13	-2.1
3,249,604	-		IAI47_15440	0.13	+0.4
3,249,604	-		IAI47_15440	0.13	+1.7
3,249,649	+		IAI47_15440	0.25	+0.8
3,249,649	+		IAI47_15440	0.25	-1.3
3,249,649	+		IAI47_15440	0.25	-0.0
3,249,650	-		IAI47_15440	0.25	+0.8
3,249,658	-		IAI47_15440	0.27	+0.6
3,249,699	+		IAI47_15440	0.37	-1.5
3,249,700	-		IAI47_15440	0.38	-0.1
3,249,700	-		IAI47_15440	0.38	-0.5
3,249,777	+		IAI47_15440	0.57	-0.4
3,249,777	+		IAI47_15440	0.57	+0.2
3,249,777	+		IAI47_15440	0.57	-1.8
3,249,777	+		IAI47_15440	0.57	-1.2
3,249,778	-		IAI47_15440	0.58	+0.0
3,249,778	-		IAI47_15440	0.58	-0.3
3,249,782	+		IAI47_15440	0.59	+0.4
3,249,783	-		IAI47_15440	0.59	+0.3
3,249,783	-		IAI47_15440	0.59	-0.2
3,249,783	-		IAI47_15440	0.59	+0.7
3,249,783	-		IAI47_15440	0.59	-0.9
3,249,783	-		IAI47_15440	0.59	-0.8
3,249,783	-		IAI47_15440	0.59	-1.5
3,249,833	+		IAI47_15440	0.72	+1.8
3,249,833	+		IAI47_15440	0.72	-0.1
3,249,834	-		IAI47_15440	0.72	-0.3
3,249,834	-		IAI47_15440	0.72	-0.8
3,249,836	+		IAI47_15440	0.73	-0.7
3,249,836	+		IAI47_15440	0.73	-1.5
3,249,837	-		IAI47_15440	0.73	+0.3
3,249,837	-		IAI47_15440	0.73	-1.1
3,249,872	+		IAI47_15440	0.82	-1.6
3,249,872	+		IAI47_15440	0.82	+1.3
3,249,872	+		IAI47_15440	0.82	+1.3
3,249,872	+		IAI47_15440	0.82	-1.4
3,249,872	+		IAI47_15440	0.82	-0.3
3,249,872	+		IAI47_15440	0.82	-0.5
3,249,873	-		IAI47_15440	0.82	-0.9
3,249,873	-		IAI47_15440	0.82	+0.6
3,249,873	-		IAI47_15440	0.82	-1.0
3,249,873	-		IAI47_15440	0.82	+0.6
3,249,873	-		IAI47_15440	0.82	-0.6
3,249,873	-		IAI47_15440	0.82	-0.7
3,249,873	-		IAI47_15440	0.82	-1.3
3,249,894	-		IAI47_15440	0.87	+0.5
3,249,894	-		IAI47_15440	0.87	+0.4
3,249,931	+				-1.0
3,249,949	+				+0.2
3,249,989	+				-0.0
3,249,992	+				-2.0
3,249,992	+				-2.4
3,249,992	+				-0.4
3,249,992	+				+1.1
3,249,992	+				-0.8
3,249,992	+				-0.8
3,249,992	+				-1.7
3,249,993	-				-0.5
3,249,993	-				-0.4
3,249,993	-				-0.6
3,250,001	-				+0.3
3,250,009	-				-0.4
3,250,009	-				-0.1
3,250,009	-				-0.7
3,250,009	-				-0.5
3,250,075	+				-1.3
3,250,076	-				+1.1
3,250,109	-				+0.3
3,250,109	-				+1.3
3,250,156	+				-1.1
3,250,157	-				+0.3
3,250,402	+		IAI47_15445	0.18	-1.5
3,250,403	-		IAI47_15445	0.18	-0.1
3,250,411	-		IAI47_15445	0.19	-2.1
3,250,431	+		IAI47_15445	0.20	-0.2
3,250,455	-		IAI47_15445	0.21	+0.5
3,250,473	+		IAI47_15445	0.22	-0.7
3,250,537	+		IAI47_15445	0.25	-0.6
3,250,538	-		IAI47_15445	0.25	-0.3
3,250,560	+		IAI47_15445	0.26	-1.9
3,250,561	-		IAI47_15445	0.26	+0.1
3,250,561	-		IAI47_15445	0.26	-2.4
3,250,561	-		IAI47_15445	0.26	-0.7
3,250,561	-		IAI47_15445	0.26	-0.3
3,250,675	+		IAI47_15445	0.31	+0.2
3,250,698	+		IAI47_15445	0.32	-0.2
3,250,698	+		IAI47_15445	0.32	-1.2
3,250,698	+		IAI47_15445	0.32	-0.6
3,250,698	+		IAI47_15445	0.32	-1.6
3,250,699	-		IAI47_15445	0.32	+0.2
3,250,699	-		IAI47_15445	0.32	+1.9
3,250,699	-		IAI47_15445	0.32	-0.5
3,250,702	+		IAI47_15445	0.32	-1.4
3,250,702	+		IAI47_15445	0.32	-0.3
3,250,702	+		IAI47_15445	0.32	+0.8
3,250,702	+		IAI47_15445	0.32	-1.4
3,250,702	+		IAI47_15445	0.32	-1.7
3,250,702	+		IAI47_15445	0.32	-0.6
3,250,702	+		IAI47_15445	0.32	-1.3
3,250,702	+		IAI47_15445	0.32	-0.3
3,250,702	+		IAI47_15445	0.32	-0.8
3,250,702	+		IAI47_15445	0.32	+0.1
3,250,702	+		IAI47_15445	0.32	+1.3
3,250,702	+		IAI47_15445	0.32	-0.9
3,250,702	+		IAI47_15445	0.32	+0.0
3,250,702	+		IAI47_15445	0.32	-0.1
3,250,702	+		IAI47_15445	0.32	-1.2
3,250,702	+		IAI47_15445	0.32	-0.5
3,250,702	+		IAI47_15445	0.32	+0.3
3,250,702	+		IAI47_15445	0.32	-0.3
3,250,702	+		IAI47_15445	0.32	-2.7
3,250,702	+		IAI47_15445	0.32	-0.7
3,250,702	+		IAI47_15445	0.32	+0.3
3,250,703	-		IAI47_15445	0.32	-0.2
3,250,703	-		IAI47_15445	0.32	-0.5
3,250,703	-		IAI47_15445	0.32	+0.7
3,250,703	-		IAI47_15445	0.32	-0.6
3,250,703	-		IAI47_15445	0.32	-0.8
3,250,703	-		IAI47_15445	0.32	+0.2
3,250,703	-		IAI47_15445	0.32	-0.1
3,250,703	-		IAI47_15445	0.32	+0.4
3,250,703	-		IAI47_15445	0.32	-0.9
3,250,703	-		IAI47_15445	0.32	-1.2
3,250,703	-		IAI47_15445	0.32	-1.5
3,250,703	-		IAI47_15445	0.32	-0.3
3,250,703	-		IAI47_15445	0.32	+1.9
3,250,703	-		IAI47_15445	0.32	-2.9
3,250,703	-		IAI47_15445	0.32	+0.3
3,250,703	-		IAI47_15445	0.32	-0.2
3,250,703	-		IAI47_15445	0.32	-0.4
3,250,703	-		IAI47_15445	0.32	-1.0
3,250,724	-		IAI47_15445	0.33	+0.3
3,250,724	-		IAI47_15445	0.33	+0.0
3,250,724	-		IAI47_15445	0.33	+0.2
3,250,724	-		IAI47_15445	0.33	+0.1
3,250,798	+		IAI47_15445	0.37	-0.5
3,250,900	+		IAI47_15445	0.42	+0.5
3,250,930	+		IAI47_15445	0.43	-0.5
3,250,947	+		IAI47_15445	0.44	-0.4
3,250,948	-		IAI47_15445	0.44	+0.4
3,250,948	-		IAI47_15445	0.44	-2.0
3,250,948	-		IAI47_15445	0.44	-0.8
3,250,975	+		IAI47_15445	0.45	+0.7
3,250,975	+		IAI47_15445	0.45	+0.3
3,250,975	+		IAI47_15445	0.45	-0.5
3,250,975	+		IAI47_15445	0.45	-3.5
3,250,975	+		IAI47_15445	0.45	-1.2
3,250,976	-		IAI47_15445	0.45	-1.3
3,250,976	-		IAI47_15445	0.45	-2.3
3,250,976	-		IAI47_15445	0.45	+1.3
3,250,976	-		IAI47_15445	0.45	+0.9
3,250,977	+		IAI47_15445	0.45	-1.3
3,250,977	+		IAI47_15445	0.45	-1.3
3,250,977	+		IAI47_15445	0.45	+0.5
3,250,977	+		IAI47_15445	0.45	-0.3
3,250,977	+		IAI47_15445	0.45	-0.4
3,250,977	+		IAI47_15445	0.45	+1.1
3,250,977	+		IAI47_15445	0.45	+1.0
3,250,977	+		IAI47_15445	0.45	-1.7
3,250,978	-		IAI47_15445	0.45	-1.0
3,250,978	-		IAI47_15445	0.45	+0.9
3,250,978	-		IAI47_15445	0.45	+0.0
3,250,978	-		IAI47_15445	0.45	-1.0
3,250,978	-		IAI47_15445	0.45	-1.3
3,251,004	+		IAI47_15445	0.46	+0.1
3,251,014	+		IAI47_15445	0.47	-1.1
3,251,014	+		IAI47_15445	0.47	+0.2
3,251,014	+		IAI47_15445	0.47	-0.2
3,251,056	+		IAI47_15445	0.49	-0.3
3,251,056	+		IAI47_15445	0.49	+1.0
3,251,076	+		IAI47_15445	0.50	-0.7
3,251,076	+		IAI47_15445	0.50	-1.5
3,251,076	+		IAI47_15445	0.50	+0.8
3,251,076	+		IAI47_15445	0.50	-0.7
3,251,077	-		IAI47_15445	0.50	-2.8
3,251,077	-		IAI47_15445	0.50	-2.8
3,251,077	-		IAI47_15445	0.50	-0.8
3,251,077	-		IAI47_15445	0.50	-0.6
3,251,077	-		IAI47_15445	0.50	-0.8
3,251,110	+		IAI47_15445	0.51	-1.0
3,251,110	+		IAI47_15445	0.51	-0.3
3,251,110	+		IAI47_15445	0.51	-0.5
3,251,111	-		IAI47_15445	0.51	-1.3
3,251,111	-		IAI47_15445	0.51	+0.1
3,251,111	-		IAI47_15445	0.51	-1.3
3,251,111	-		IAI47_15445	0.51	+0.0
3,251,111	-		IAI47_15445	0.51	-1.1
3,251,127	+		IAI47_15445	0.52	-0.9
3,251,148	+		IAI47_15445	0.53	-1.2
3,251,148	+		IAI47_15445	0.53	+1.7
3,251,148	+		IAI47_15445	0.53	-2.0
3,251,149	-		IAI47_15445	0.53	+0.3
3,251,149	-		IAI47_15445	0.53	-0.0
3,251,149	-		IAI47_15445	0.53	-0.1
3,251,149	-		IAI47_15445	0.53	+0.1
3,251,149	-		IAI47_15445	0.53	-1.8
3,251,149	-		IAI47_15445	0.53	-1.0
3,251,200	+		IAI47_15445	0.55	+1.7
3,251,200	+		IAI47_15445	0.55	-0.9
3,251,200	+		IAI47_15445	0.55	-0.2
3,251,200	+		IAI47_15445	0.55	-1.0
3,251,200	+		IAI47_15445	0.55	-1.1
3,251,200	+		IAI47_15445	0.55	-1.2
3,251,205	+		IAI47_15445	0.56	+0.7
3,251,206	-		IAI47_15445	0.56	+0.6
3,251,206	-		IAI47_15445	0.56	-0.7
3,251,206	-		IAI47_15445	0.56	-0.4
3,251,215	+		IAI47_15445	0.56	-0.8
3,251,215	+		IAI47_15445	0.56	-2.1
3,251,215	+		IAI47_15445	0.56	-0.3
3,251,215	+		IAI47_15445	0.56	+0.7
3,251,215	+		IAI47_15445	0.56	-0.7
3,251,215	+		IAI47_15445	0.56	-1.2
3,251,215	+		IAI47_15445	0.56	+0.2
3,251,216	-		IAI47_15445	0.56	+0.4
3,251,216	-		IAI47_15445	0.56	-0.7
3,251,216	-		IAI47_15445	0.56	-1.3
3,251,216	-		IAI47_15445	0.56	-0.2
3,251,216	-		IAI47_15445	0.56	+1.1
3,251,217	+		IAI47_15445	0.56	+0.5
3,251,217	+		IAI47_15445	0.56	-1.0
3,251,217	+		IAI47_15445	0.56	-0.2
3,251,217	+		IAI47_15445	0.56	-0.4
3,251,217	+		IAI47_15445	0.56	+0.7
3,251,218	-		IAI47_15445	0.56	-1.0
3,251,218	-		IAI47_15445	0.56	-1.7
3,251,218	-		IAI47_15445	0.56	+0.1
3,251,218	-		IAI47_15445	0.56	+0.8
3,251,218	-		IAI47_15445	0.56	+0.3
3,251,218	-		IAI47_15445	0.56	-0.4
3,251,218	-		IAI47_15445	0.56	+1.3
3,251,218	-		IAI47_15445	0.56	+0.1
3,251,232	+		IAI47_15445	0.57	-1.8
3,251,232	+		IAI47_15445	0.57	+1.3
3,251,232	+		IAI47_15445	0.57	+0.2
3,251,232	+		IAI47_15445	0.57	+0.7
3,251,233	-		IAI47_15445	0.57	-1.0
3,251,233	-		IAI47_15445	0.57	-1.7
3,251,233	-		IAI47_15445	0.57	-1.5
3,251,233	-		IAI47_15445	0.57	+0.2
3,251,233	-		IAI47_15445	0.57	+0.1
3,251,250	-		IAI47_15445	0.58	-0.8
3,251,300	-		IAI47_15445	0.60	+1.5
3,251,300	-		IAI47_15445	0.60	+2.0
3,251,300	-		IAI47_15445	0.60	-2.1
3,251,300	-		IAI47_15445	0.60	-1.3
3,251,466	+		IAI47_15445	0.68	+0.0
3,251,466	+		IAI47_15445	0.68	-0.8
3,251,466	+		IAI47_15445	0.68	-1.1
3,251,466	+		IAI47_15445	0.68	-0.3
3,251,466	+		IAI47_15445	0.68	+0.3
3,251,466	+		IAI47_15445	0.68	+0.3
3,251,467	-		IAI47_15445	0.68	-0.3
3,251,467	-		IAI47_15445	0.68	-0.2
3,251,467	-		IAI47_15445	0.68	-2.4
3,251,467	-		IAI47_15445	0.68	-1.9
3,251,467	-		IAI47_15445	0.68	-1.6
3,251,467	-		IAI47_15445	0.68	-0.8
3,251,467	-		IAI47_15445	0.68	-1.5
3,251,467	-		IAI47_15445	0.68	-1.7
3,251,467	-		IAI47_15445	0.68	-1.7
3,251,467	-		IAI47_15445	0.68	-2.0
3,251,514	+		IAI47_15445	0.70	-0.3
3,251,514	+		IAI47_15445	0.70	-2.1
3,251,514	+		IAI47_15445	0.70	-0.5
3,251,514	+		IAI47_15445	0.70	-1.5
3,251,514	+		IAI47_15445	0.70	-1.0
3,251,514	+		IAI47_15445	0.70	+0.4
3,251,515	-		IAI47_15445	0.70	-0.6
3,251,515	-		IAI47_15445	0.70	+0.3
3,251,515	-		IAI47_15445	0.70	-3.5
3,251,515	-		IAI47_15445	0.70	-1.7
3,251,515	-		IAI47_15445	0.70	-1.1
3,251,515	-		IAI47_15445	0.70	-1.4
3,251,515	-		IAI47_15445	0.70	+1.3
3,251,515	-		IAI47_15445	0.70	-0.3
3,251,545	+		IAI47_15445	0.72	+0.1
3,251,545	+		IAI47_15445	0.72	-1.0
3,251,545	+		IAI47_15445	0.72	-1.6
3,251,546	-		IAI47_15445	0.72	-0.7
3,251,546	-		IAI47_15445	0.72	-0.7
3,251,546	-		IAI47_15445	0.72	-0.7
3,251,546	-		IAI47_15445	0.72	+0.0
3,251,547	+		IAI47_15445	0.72	+0.3
3,251,547	+		IAI47_15445	0.72	-0.8
3,251,547	+		IAI47_15445	0.72	-0.2
3,251,547	+		IAI47_15445	0.72	+0.9
3,251,548	-		IAI47_15445	0.72	-2.6
3,251,548	-		IAI47_15445	0.72	+0.1
3,251,548	-		IAI47_15445	0.72	+1.3
3,251,548	-		IAI47_15445	0.72	-0.5
3,251,548	-		IAI47_15445	0.72	-1.3
3,251,548	-		IAI47_15445	0.72	-2.4
3,251,548	-		IAI47_15445	0.72	-0.8
3,251,548	-		IAI47_15445	0.72	+0.3
3,251,548	-		IAI47_15445	0.72	-1.5
3,251,548	-		IAI47_15445	0.72	-0.4
3,251,548	-		IAI47_15445	0.72	-2.1
3,251,617	+		IAI47_15445	0.75	-0.1
3,251,617	+		IAI47_15445	0.75	-0.8
3,251,618	-				+1.3
3,251,618	-		IAI47_15445	0.75	-1.5
3,251,632	+		IAI47_15445	0.76	+1.1
3,251,632	+		IAI47_15445	0.76	+0.3
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