Strain Fitness in Pantoea sp. MT58 around IAI47_04215

Experiment: Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04205 and IAI47_04210 overlap by 4 nucleotidesIAI47_04210 and IAI47_04215 overlap by 4 nucleotidesIAI47_04215 and IAI47_04220 are separated by 191 nucleotidesIAI47_04220 and IAI47_04225 overlap by 7 nucleotides IAI47_04205: IAI47_04205 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 883,159 to 883,875 _04205 IAI47_04210: IAI47_04210 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 883,872 to 884,357 _04210 IAI47_04215: IAI47_04215 - tRNA pseudouridine(13) synthase TruD, at 884,354 to 885,394 _04215 IAI47_04220: IAI47_04220 - 5'/3'-nucleotidase SurE, at 885,586 to 886,347 _04220 IAI47_04225: IAI47_04225 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 886,341 to 886,967 _04225 Position (kb) 884 885 886Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 883.859 kb on + strandat 883.859 kb on + strandat 883.859 kb on + strandat 884.366 kb on + strandat 884.366 kb on + strandat 884.366 kb on + strandat 884.366 kb on + strandat 884.366 kb on + strandat 884.366 kb on + strandat 884.489 kb on - strand, within IAI47_04215at 884.530 kb on + strand, within IAI47_04215at 884.530 kb on + strand, within IAI47_04215at 884.531 kb on - strand, within IAI47_04215at 884.531 kb on - strand, within IAI47_04215at 884.531 kb on - strand, within IAI47_04215at 884.534 kb on + strand, within IAI47_04215at 884.534 kb on + strand, within IAI47_04215at 884.534 kb on + strand, within IAI47_04215at 884.534 kb on + strand, within IAI47_04215at 884.534 kb on + strand, within IAI47_04215at 884.534 kb on + strand, within IAI47_04215at 884.534 kb on + strand, within IAI47_04215at 884.535 kb on - strand, within IAI47_04215at 884.535 kb on - strand, within IAI47_04215at 884.535 kb on - strand, within IAI47_04215at 884.535 kb on - strand, within IAI47_04215at 884.535 kb on - strand, within IAI47_04215at 884.542 kb on + strand, within IAI47_04215at 884.543 kb on - strand, within IAI47_04215at 884.564 kb on + strand, within IAI47_04215at 884.564 kb on + strand, within IAI47_04215at 884.565 kb on - strand, within IAI47_04215at 884.565 kb on - strand, within IAI47_04215at 884.653 kb on + strand, within IAI47_04215at 884.698 kb on + strand, within IAI47_04215at 884.698 kb on + strand, within IAI47_04215at 884.698 kb on + strand, within IAI47_04215at 884.698 kb on + strand, within IAI47_04215at 884.698 kb on + strand, within IAI47_04215at 884.698 kb on + strand, within IAI47_04215at 884.699 kb on - strand, within IAI47_04215at 884.699 kb on - strand, within IAI47_04215at 884.816 kb on + strand, within IAI47_04215at 884.816 kb on + strand, within IAI47_04215at 884.816 kb on + strand, within IAI47_04215at 884.816 kb on + strand, within IAI47_04215at 884.816 kb on + strand, within IAI47_04215at 884.816 kb on + strand, within IAI47_04215at 884.817 kb on - strand, within IAI47_04215at 884.817 kb on - strand, within IAI47_04215at 884.817 kb on - strand, within IAI47_04215at 884.851 kb on + strand, within IAI47_04215at 884.852 kb on - strand, within IAI47_04215at 884.950 kb on + strand, within IAI47_04215at 884.950 kb on + strand, within IAI47_04215at 884.951 kb on - strand, within IAI47_04215at 884.951 kb on - strand, within IAI47_04215at 885.191 kb on - strand, within IAI47_04215at 885.191 kb on - strand, within IAI47_04215at 885.266 kb on - strand, within IAI47_04215at 885.392 kb on + strandat 885.392 kb on + strandat 885.392 kb on + strandat 885.393 kb on - strandat 885.393 kb on - strandat 885.393 kb on - strandat 885.410 kb on + strandat 885.411 kb on - strandat 885.425 kb on + strandat 885.425 kb on + strandat 885.425 kb on + strandat 885.459 kb on + strandat 885.459 kb on + strandat 885.459 kb on + strandat 885.459 kb on + strandat 885.459 kb on + strandat 885.460 kb on - strandat 885.460 kb on - strandat 885.460 kb on - strandat 885.460 kb on - strandat 885.460 kb on - strandat 885.460 kb on - strandat 885.465 kb on + strandat 885.466 kb on - strandat 885.466 kb on - strandat 885.488 kb on + strandat 885.488 kb on + strandat 885.488 kb on + strandat 885.489 kb on - strandat 885.489 kb on - strandat 885.491 kb on - strandat 885.534 kb on + strandat 885.534 kb on + strandat 885.593 kb on + strandat 885.631 kb on - strandat 885.711 kb on + strand, within IAI47_04220at 885.711 kb on + strand, within IAI47_04220at 885.711 kb on + strand, within IAI47_04220at 885.742 kb on - strand, within IAI47_04220at 885.747 kb on + strand, within IAI47_04220at 885.748 kb on - strand, within IAI47_04220at 885.802 kb on + strand, within IAI47_04220at 885.802 kb on + strand, within IAI47_04220at 885.803 kb on - strand, within IAI47_04220at 885.859 kb on - strand, within IAI47_04220at 885.859 kb on - strand, within IAI47_04220at 885.892 kb on + strand, within IAI47_04220at 885.892 kb on + strand, within IAI47_04220at 885.892 kb on + strand, within IAI47_04220at 885.892 kb on + strand, within IAI47_04220at 885.893 kb on - strand, within IAI47_04220at 885.901 kb on - strand, within IAI47_04220at 885.976 kb on + strand, within IAI47_04220at 886.056 kb on + strand, within IAI47_04220at 886.167 kb on + strand, within IAI47_04220at 886.168 kb on - strand, within IAI47_04220at 886.168 kb on - strand, within IAI47_04220at 886.175 kb on - strand, within IAI47_04220at 886.175 kb on - strand, within IAI47_04220at 886.175 kb on - strand, within IAI47_04220at 886.181 kb on + strand, within IAI47_04220at 886.182 kb on - strand, within IAI47_04220at 886.182 kb on - strand, within IAI47_04220at 886.182 kb on - strand, within IAI47_04220at 886.246 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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883,859 + +0.7
883,859 + +1.3
883,859 + +1.1
884,366 + +2.1
884,366 + -1.0
884,366 + +2.3
884,366 + +3.3
884,366 + +1.0
884,366 + -2.0
884,489 - IAI47_04215 0.13 -1.0
884,530 + IAI47_04215 0.17 +0.1
884,530 + IAI47_04215 0.17 -0.9
884,531 - IAI47_04215 0.17 -0.3
884,531 - IAI47_04215 0.17 -0.3
884,531 - IAI47_04215 0.17 -1.7
884,534 + IAI47_04215 0.17 -0.4
884,534 + IAI47_04215 0.17 +0.6
884,534 + IAI47_04215 0.17 +4.3
884,534 + IAI47_04215 0.17 -0.7
884,534 + IAI47_04215 0.17 +0.6
884,534 + IAI47_04215 0.17 +2.3
884,534 + IAI47_04215 0.17 +2.2
884,535 - IAI47_04215 0.17 -1.7
884,535 - IAI47_04215 0.17 -0.3
884,535 - IAI47_04215 0.17 -0.4
884,535 - IAI47_04215 0.17 -0.4
884,535 - IAI47_04215 0.17 -3.7
884,542 + IAI47_04215 0.18 +1.6
884,543 - IAI47_04215 0.18 +0.3
884,564 + IAI47_04215 0.20 +0.1
884,564 + IAI47_04215 0.20 -0.4
884,565 - IAI47_04215 0.20 -1.3
884,565 - IAI47_04215 0.20 +0.3
884,653 + IAI47_04215 0.29 +4.1
884,698 + IAI47_04215 0.33 +0.8
884,698 + IAI47_04215 0.33 -1.4
884,698 + IAI47_04215 0.33 -0.2
884,698 + IAI47_04215 0.33 +3.0
884,698 + IAI47_04215 0.33 +0.3
884,698 + IAI47_04215 0.33 +4.2
884,699 - IAI47_04215 0.33 +2.6
884,699 - IAI47_04215 0.33 -0.7
884,816 + IAI47_04215 0.44 -0.5
884,816 + IAI47_04215 0.44 -0.5
884,816 + IAI47_04215 0.44 -2.1
884,816 + IAI47_04215 0.44 +0.8
884,816 + IAI47_04215 0.44 +0.7
884,816 + IAI47_04215 0.44 -0.3
884,817 - IAI47_04215 0.44 +0.7
884,817 - IAI47_04215 0.44 -0.7
884,817 - IAI47_04215 0.44 -0.8
884,851 + IAI47_04215 0.48 +1.0
884,852 - IAI47_04215 0.48 -0.6
884,950 + IAI47_04215 0.57 +2.3
884,950 + IAI47_04215 0.57 +0.8
884,951 - IAI47_04215 0.57 -0.1
884,951 - IAI47_04215 0.57 -0.5
885,191 - IAI47_04215 0.80 +0.7
885,191 - IAI47_04215 0.80 -0.6
885,266 - IAI47_04215 0.88 +0.1
885,392 + +0.2
885,392 + -1.7
885,392 + -0.8
885,393 - -0.7
885,393 - -0.4
885,393 - -0.7
885,410 + +0.3
885,411 - -1.1
885,425 + -1.5
885,425 + -1.8
885,425 + -0.4
885,459 + -1.5
885,459 + +0.3
885,459 + -0.3
885,459 + -1.8
885,459 + -2.0
885,460 - -2.3
885,460 - +0.3
885,460 - -1.8
885,460 - -1.3
885,460 - +0.7
885,460 - -0.5
885,465 + +0.3
885,466 - +1.5
885,466 - -0.4
885,488 + +0.5
885,488 + -1.5
885,488 + +0.3
885,489 - +0.1
885,489 - +0.1
885,491 - -0.3
885,534 + -1.3
885,534 + -0.3
885,593 + -1.3
885,631 - +2.2
885,711 + IAI47_04220 0.16 +1.1
885,711 + IAI47_04220 0.16 +2.5
885,711 + IAI47_04220 0.16 +2.1
885,742 - IAI47_04220 0.20 +0.0
885,747 + IAI47_04220 0.21 +0.3
885,748 - IAI47_04220 0.21 +0.3
885,802 + IAI47_04220 0.28 -1.0
885,802 + IAI47_04220 0.28 +0.7
885,803 - IAI47_04220 0.28 +0.5
885,859 - IAI47_04220 0.36 -0.7
885,859 - IAI47_04220 0.36 +1.0
885,892 + IAI47_04220 0.40 -0.7
885,892 + IAI47_04220 0.40 -0.5
885,892 + IAI47_04220 0.40 +0.6
885,892 + IAI47_04220 0.40 +2.6
885,893 - IAI47_04220 0.40 -0.3
885,901 - IAI47_04220 0.41 -0.7
885,976 + IAI47_04220 0.51 -0.1
886,056 + IAI47_04220 0.62 -0.7
886,167 + IAI47_04220 0.76 +1.2
886,168 - IAI47_04220 0.76 -0.3
886,168 - IAI47_04220 0.76 -2.0
886,175 - IAI47_04220 0.77 +1.1
886,175 - IAI47_04220 0.77 -0.5
886,175 - IAI47_04220 0.77 -0.4
886,181 + IAI47_04220 0.78 +0.9
886,182 - IAI47_04220 0.78 +1.9
886,182 - IAI47_04220 0.78 +0.1
886,182 - IAI47_04220 0.78 +0.1
886,246 + +1.3

Or see this region's nucleotide sequence