Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21875

Experiment: Carbon source D-Glucose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS21870 and HSERO_RS21875 are separated by 70 nucleotidesHSERO_RS21875 and HSERO_RS21880 are separated by 21 nucleotides HSERO_RS21870: HSERO_RS21870 - amidase, at 5,006,683 to 5,008,203 _RS21870 HSERO_RS21875: HSERO_RS21875 - endoribonuclease L-PSP, at 5,008,274 to 5,008,624 _RS21875 HSERO_RS21880: HSERO_RS21880 - FAD-dependent oxidoreductase, at 5,008,646 to 5,009,785 _RS21880 Position (kb) 5008 5009Strain fitness (log2 ratio) -1 0 1at 5007.631 kb on + strand, within HSERO_RS21870at 5007.907 kb on + strand, within HSERO_RS21870at 5008.051 kb on + strand, within HSERO_RS21870at 5008.085 kb on + strandat 5008.299 kb on - strandat 5008.465 kb on + strand, within HSERO_RS21875at 5008.516 kb on + strand, within HSERO_RS21875at 5008.618 kb on + strandat 5008.807 kb on + strandat 5008.964 kb on + strand, within HSERO_RS21880at 5009.027 kb on + strand, within HSERO_RS21880at 5009.028 kb on + strand, within HSERO_RS21880at 5009.065 kb on + strandat 5009.094 kb on + strand, within HSERO_RS21880at 5009.104 kb on + strand, within HSERO_RS21880at 5009.157 kb on + strand, within HSERO_RS21880at 5009.173 kb on - strand, within HSERO_RS21880at 5009.214 kb on - strand, within HSERO_RS21880at 5009.323 kb on - strand, within HSERO_RS21880at 5009.338 kb on - strand, within HSERO_RS21880

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 20 mM
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5,007,631 + HSERO_RS21870 0.62 +0.0
5,007,907 + HSERO_RS21870 0.80 +0.1
5,008,051 + HSERO_RS21870 0.90 -0.6
5,008,085 + +0.1
5,008,299 - +0.4
5,008,465 + HSERO_RS21875 0.54 +0.8
5,008,516 + HSERO_RS21875 0.69 -0.0
5,008,618 + +0.4
5,008,807 + +0.9
5,008,964 + HSERO_RS21880 0.28 +0.3
5,009,027 + HSERO_RS21880 0.33 +0.1
5,009,028 + HSERO_RS21880 0.34 -0.1
5,009,065 + +0.9
5,009,094 + HSERO_RS21880 0.39 +1.3
5,009,104 + HSERO_RS21880 0.40 +0.0
5,009,157 + HSERO_RS21880 0.45 -0.8
5,009,173 - HSERO_RS21880 0.46 +0.0
5,009,214 - HSERO_RS21880 0.50 +0.0
5,009,323 - HSERO_RS21880 0.59 -0.2
5,009,338 - HSERO_RS21880 0.61 -0.3

Or see this region's nucleotide sequence