Experiment: Carbon source D-Glucose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20030 and HSERO_RS20035 are separated by 27 nucleotides HSERO_RS20035 and HSERO_RS20040 are separated by 16 nucleotides HSERO_RS20040 and HSERO_RS20045 are separated by 263 nucleotides
HSERO_RS20030: HSERO_RS20030 - acetyl-CoA acetyltransferase, at 4,597,086 to 4,598,339
_RS20030
HSERO_RS20035: HSERO_RS20035 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 4,598,367 to 4,599,131
_RS20035
HSERO_RS20040: HSERO_RS20040 - 4-hydroxybenzoyl-CoA thioesterase, at 4,599,148 to 4,599,567
_RS20040
HSERO_RS20045: HSERO_RS20045 - branched-chain amino acid ABC transporter substrate-binding protein, at 4,599,831 to 4,600,976
_RS20045
Position (kb) 4598
4599
4600 Strain fitness (log2 ratio) -1
0
1 at 4597.437 kb on - strand, within HSERO_RS20030 at 4597.517 kb on + strand, within HSERO_RS20030 at 4597.866 kb on + strand at 4597.912 kb on + strand, within HSERO_RS20030 at 4598.171 kb on - strand, within HSERO_RS20030 at 4598.356 kb on + strand at 4598.371 kb on - strand at 4598.415 kb on - strand at 4598.782 kb on - strand, within HSERO_RS20035 at 4598.904 kb on - strand at 4599.007 kb on - strand, within HSERO_RS20035 at 4599.162 kb on + strand at 4599.244 kb on - strand, within HSERO_RS20040 at 4599.377 kb on + strand, within HSERO_RS20040 at 4599.517 kb on - strand, within HSERO_RS20040 at 4599.584 kb on + strand at 4599.675 kb on + strand at 4599.683 kb on - strand at 4599.773 kb on + strand at 4599.779 kb on - strand at 4599.822 kb on - strand at 4599.881 kb on - strand at 4599.886 kb on - strand at 4599.901 kb on - strand at 4599.911 kb on - strand at 4599.924 kb on - strand at 4599.961 kb on - strand, within HSERO_RS20045 at 4600.123 kb on + strand, within HSERO_RS20045 at 4600.128 kb on + strand, within HSERO_RS20045
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 20 mM remove 4,597,437 - HSERO_RS20030 0.28 +0.6 4,597,517 + HSERO_RS20030 0.34 +0.2 4,597,866 + +0.9 4,597,912 + HSERO_RS20030 0.66 -0.5 4,598,171 - HSERO_RS20030 0.87 -0.1 4,598,356 + -0.3 4,598,371 - -0.3 4,598,415 - +0.2 4,598,782 - HSERO_RS20035 0.54 +0.2 4,598,904 - +0.9 4,599,007 - HSERO_RS20035 0.84 +0.8 4,599,162 + -0.6 4,599,244 - HSERO_RS20040 0.23 -0.2 4,599,377 + HSERO_RS20040 0.55 -0.1 4,599,517 - HSERO_RS20040 0.88 +0.3 4,599,584 + -0.0 4,599,675 + +0.5 4,599,683 - -0.9 4,599,773 + -1.3 4,599,779 - +0.7 4,599,822 - +0.4 4,599,881 - -0.3 4,599,886 - +0.5 4,599,901 - -0.7 4,599,911 - +0.3 4,599,924 - +0.9 4,599,961 - HSERO_RS20045 0.11 +0.1 4,600,123 + HSERO_RS20045 0.25 -0.3 4,600,128 + HSERO_RS20045 0.26 -0.0
Or see this region's nucleotide sequence