Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19770

Experiment: Carbon source D-Glucose 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS19765 and HSERO_RS19770 are separated by 329 nucleotidesHSERO_RS19770 and HSERO_RS19775 overlap by 1 nucleotides HSERO_RS19765: HSERO_RS19765 - amino acid permease, at 4,533,591 to 4,535,048 _RS19765 HSERO_RS19770: HSERO_RS19770 - hypothetical protein, at 4,535,378 to 4,535,647 _RS19770 HSERO_RS19775: HSERO_RS19775 - acriflavine resistance protein B, at 4,535,647 to 4,538,748 _RS19775 Position (kb) 4535 4536Strain fitness (log2 ratio) -1 0 1at 4534.472 kb on + strand, within HSERO_RS19765at 4534.474 kb on - strand, within HSERO_RS19765at 4534.535 kb on - strand, within HSERO_RS19765at 4535.027 kb on - strandat 4535.027 kb on - strandat 4535.061 kb on - strandat 4535.420 kb on - strand, within HSERO_RS19770at 4535.890 kb on + strandat 4536.035 kb on + strand, within HSERO_RS19775at 4536.172 kb on + strand, within HSERO_RS19775at 4536.350 kb on + strand, within HSERO_RS19775

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 20 mM
remove
4,534,472 + HSERO_RS19765 0.60 +0.3
4,534,474 - HSERO_RS19765 0.61 -1.2
4,534,535 - HSERO_RS19765 0.65 -0.2
4,535,027 - +0.5
4,535,027 - -0.0
4,535,061 - +0.5
4,535,420 - HSERO_RS19770 0.16 +0.5
4,535,890 + -0.8
4,536,035 + HSERO_RS19775 0.13 +0.4
4,536,172 + HSERO_RS19775 0.17 -0.5
4,536,350 + HSERO_RS19775 0.23 -0.2

Or see this region's nucleotide sequence