Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10685

Experiment: Carbon source D-Glucose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS10675 and HSERO_RS10680 are separated by 227 nucleotidesHSERO_RS10680 and HSERO_RS10685 are separated by 49 nucleotidesHSERO_RS10685 and HSERO_RS10690 are separated by 126 nucleotidesHSERO_RS10690 and HSERO_RS10695 are separated by 143 nucleotides HSERO_RS10675: HSERO_RS10675 - diguanylate cyclase, at 2,402,130 to 2,404,181 _RS10675 HSERO_RS10680: HSERO_RS10680 - superoxide dismutase, at 2,404,409 to 2,404,936 _RS10680 HSERO_RS10685: HSERO_RS10685 - serine endopeptidase, at 2,404,986 to 2,406,029 _RS10685 HSERO_RS10690: HSERO_RS10690 - tRNA-Ser, at 2,406,156 to 2,406,249 _RS10690 HSERO_RS10695: HSERO_RS10695 - aspartate kinase, at 2,406,393 to 2,407,646 _RS10695 Position (kb) 2404 2405 2406 2407Strain fitness (log2 ratio) -1 0 1at 2404.094 kb on - strandat 2404.139 kb on + strandat 2404.183 kb on - strandat 2404.269 kb on - strandat 2404.514 kb on - strand, within HSERO_RS10680at 2404.514 kb on - strandat 2404.714 kb on + strand, within HSERO_RS10680at 2404.791 kb on + strand, within HSERO_RS10680at 2404.980 kb on - strandat 2405.003 kb on - strandat 2405.776 kb on + strand, within HSERO_RS10685at 2405.828 kb on - strand, within HSERO_RS10685

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 20 mM
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2,404,094 - +0.2
2,404,139 + -1.1
2,404,183 - -0.2
2,404,269 - -0.2
2,404,514 - HSERO_RS10680 0.20 -0.1
2,404,514 - +1.4
2,404,714 + HSERO_RS10680 0.58 -0.0
2,404,791 + HSERO_RS10680 0.72 +0.6
2,404,980 - -0.3
2,405,003 - -0.2
2,405,776 + HSERO_RS10685 0.76 +0.2
2,405,828 - HSERO_RS10685 0.81 +0.6

Or see this region's nucleotide sequence