Experiment: Carbon source D-Glucose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04040 and HSERO_RS04045 are separated by 9 nucleotides HSERO_RS04045 and HSERO_RS04050 overlap by 11 nucleotides HSERO_RS04050 and HSERO_RS04055 overlap by 4 nucleotides
HSERO_RS04040: HSERO_RS04040 - pilus assembly protein, at 883,893 to 885,686
_RS04040
HSERO_RS04045: HSERO_RS04045 - pilus assembly protein, at 885,696 to 886,961
_RS04045
HSERO_RS04050: HSERO_RS04050 - type IV Tfp pilus assembly PilP protein, at 886,951 to 887,460
_RS04050
HSERO_RS04055: HSERO_RS04055 - secretion system protein E, at 887,457 to 889,082
_RS04055
Position (kb) 885
886
887 Strain fitness (log2 ratio) -1
0
1 at 884.842 kb on - strand, within HSERO_RS04040 at 884.985 kb on - strand, within HSERO_RS04040 at 885.011 kb on + strand, within HSERO_RS04040 at 885.017 kb on - strand, within HSERO_RS04040 at 885.433 kb on - strand, within HSERO_RS04040 at 885.514 kb on + strand at 885.722 kb on - strand at 885.982 kb on + strand, within HSERO_RS04045 at 886.327 kb on + strand, within HSERO_RS04045 at 886.444 kb on - strand, within HSERO_RS04045 at 886.648 kb on - strand, within HSERO_RS04045 at 886.652 kb on - strand, within HSERO_RS04045 at 887.009 kb on - strand, within HSERO_RS04050 at 887.064 kb on + strand, within HSERO_RS04050 at 887.224 kb on + strand, within HSERO_RS04050 at 887.225 kb on - strand, within HSERO_RS04050 at 887.283 kb on + strand, within HSERO_RS04050 at 887.437 kb on + strand at 887.445 kb on - strand at 887.773 kb on + strand, within HSERO_RS04055
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 20 mM remove 884,842 - HSERO_RS04040 0.53 -0.0 884,985 - HSERO_RS04040 0.61 +0.2 885,011 + HSERO_RS04040 0.62 +1.5 885,017 - HSERO_RS04040 0.63 -0.5 885,433 - HSERO_RS04040 0.86 +0.4 885,514 + -0.3 885,722 - -0.6 885,982 + HSERO_RS04045 0.23 +1.1 886,327 + HSERO_RS04045 0.50 -0.7 886,444 - HSERO_RS04045 0.59 +0.2 886,648 - HSERO_RS04045 0.75 -0.4 886,652 - HSERO_RS04045 0.76 +1.1 887,009 - HSERO_RS04050 0.11 +0.1 887,064 + HSERO_RS04050 0.22 +1.3 887,224 + HSERO_RS04050 0.54 -1.1 887,225 - HSERO_RS04050 0.54 -0.6 887,283 + HSERO_RS04050 0.65 +0.6 887,437 + -0.8 887,445 - -0.3 887,773 + HSERO_RS04055 0.19 +0.0
Or see this region's nucleotide sequence