Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18365

Experiment: copper (II) chloride 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18360 and BWI76_RS18365 are separated by 95 nucleotidesBWI76_RS18365 and BWI76_RS18370 are separated by 201 nucleotides BWI76_RS18360: BWI76_RS18360 - aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein, at 3,811,260 to 3,812,246 _RS18360 BWI76_RS18365: BWI76_RS18365 - cystine ABC transporter substrate-binding protein, at 3,812,342 to 3,813,142 _RS18365 BWI76_RS18370: BWI76_RS18370 - alpha-amylase, at 3,813,344 to 3,814,831 _RS18370 Position (kb) 3812 3813 3814Strain fitness (log2 ratio) -2 -1 0 1at 3811.486 kb on + strand, within BWI76_RS18360at 3811.800 kb on - strand, within BWI76_RS18360at 3811.968 kb on - strand, within BWI76_RS18360at 3812.259 kb on - strandat 3812.430 kb on + strand, within BWI76_RS18365at 3812.451 kb on + strand, within BWI76_RS18365at 3812.451 kb on + strand, within BWI76_RS18365at 3812.459 kb on - strand, within BWI76_RS18365at 3812.777 kb on - strand, within BWI76_RS18365at 3812.997 kb on - strand, within BWI76_RS18365at 3813.035 kb on - strand, within BWI76_RS18365at 3813.130 kb on - strandat 3813.183 kb on - strandat 3813.184 kb on + strandat 3813.267 kb on - strandat 3813.327 kb on + strandat 3813.330 kb on - strandat 3813.379 kb on + strandat 3813.466 kb on + strandat 3813.507 kb on + strand, within BWI76_RS18370at 3813.550 kb on + strand, within BWI76_RS18370at 3813.642 kb on + strand, within BWI76_RS18370at 3813.761 kb on + strand, within BWI76_RS18370at 3813.768 kb on - strand, within BWI76_RS18370at 3813.769 kb on - strand, within BWI76_RS18370at 3813.828 kb on + strand, within BWI76_RS18370at 3814.104 kb on - strand, within BWI76_RS18370

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 3 mM
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3,811,486 + BWI76_RS18360 0.23 -0.8
3,811,800 - BWI76_RS18360 0.55 +0.6
3,811,968 - BWI76_RS18360 0.72 -1.2
3,812,259 - +0.7
3,812,430 + BWI76_RS18365 0.11 -1.3
3,812,451 + BWI76_RS18365 0.14 -1.4
3,812,451 + BWI76_RS18365 0.14 -1.4
3,812,459 - BWI76_RS18365 0.15 -1.6
3,812,777 - BWI76_RS18365 0.54 -1.3
3,812,997 - BWI76_RS18365 0.82 -0.8
3,813,035 - BWI76_RS18365 0.87 -1.2
3,813,130 - -1.9
3,813,183 - -0.1
3,813,184 + -0.2
3,813,267 - -0.4
3,813,327 + -0.4
3,813,330 - -0.7
3,813,379 + +0.5
3,813,466 + -0.7
3,813,507 + BWI76_RS18370 0.11 +0.0
3,813,550 + BWI76_RS18370 0.14 -0.1
3,813,642 + BWI76_RS18370 0.20 -0.2
3,813,761 + BWI76_RS18370 0.28 +0.1
3,813,768 - BWI76_RS18370 0.28 -0.3
3,813,769 - BWI76_RS18370 0.29 -0.0
3,813,828 + BWI76_RS18370 0.33 -0.2
3,814,104 - BWI76_RS18370 0.51 -0.1

Or see this region's nucleotide sequence