Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12630

Experiment: copper (II) chloride 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12625 and BWI76_RS12630 are separated by 140 nucleotidesBWI76_RS12630 and BWI76_RS12635 are separated by 690 nucleotides BWI76_RS12625: BWI76_RS12625 - isoflavone reductase, at 2,635,102 to 2,636,031 _RS12625 BWI76_RS12630: BWI76_RS12630 - regulatory protein, LysR:LysR, substrate-binding protein, at 2,636,172 to 2,637,077 _RS12630 BWI76_RS12635: BWI76_RS12635 - cold-shock protein, at 2,637,768 to 2,637,956 _RS12635 Position (kb) 2636 2637 2638Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2635.194 kb on - strandat 2635.196 kb on - strand, within BWI76_RS12625at 2635.270 kb on - strand, within BWI76_RS12625at 2635.287 kb on + strand, within BWI76_RS12625at 2635.319 kb on - strand, within BWI76_RS12625at 2635.365 kb on + strand, within BWI76_RS12625at 2635.425 kb on - strand, within BWI76_RS12625at 2635.438 kb on - strand, within BWI76_RS12625at 2635.558 kb on + strand, within BWI76_RS12625at 2635.698 kb on - strand, within BWI76_RS12625at 2635.709 kb on + strand, within BWI76_RS12625at 2636.086 kb on - strandat 2636.165 kb on - strandat 2636.446 kb on - strand, within BWI76_RS12630at 2636.560 kb on + strand, within BWI76_RS12630at 2636.583 kb on + strand, within BWI76_RS12630at 2636.583 kb on + strand, within BWI76_RS12630at 2636.583 kb on + strand, within BWI76_RS12630at 2636.854 kb on + strand, within BWI76_RS12630at 2636.862 kb on - strand, within BWI76_RS12630at 2636.975 kb on - strand, within BWI76_RS12630at 2637.033 kb on + strandat 2637.139 kb on - strandat 2637.139 kb on - strandat 2637.141 kb on + strandat 2637.171 kb on - strandat 2637.249 kb on + strandat 2637.275 kb on + strandat 2637.299 kb on - strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.383 kb on - strandat 2637.383 kb on - strandat 2637.383 kb on - strandat 2637.383 kb on - strandat 2637.383 kb on - strandat 2637.383 kb on - strandat 2637.383 kb on - strandat 2637.383 kb on - strandat 2637.394 kb on + strandat 2637.397 kb on - strandat 2637.432 kb on + strandat 2637.471 kb on - strandat 2637.478 kb on - strandat 2637.520 kb on - strandat 2637.533 kb on + strandat 2637.589 kb on + strandat 2637.589 kb on + strandat 2637.602 kb on + strandat 2637.610 kb on - strandat 2637.613 kb on + strandat 2637.613 kb on + strandat 2637.646 kb on + strandat 2637.656 kb on + strandat 2637.717 kb on + strandat 2637.758 kb on + strandat 2637.764 kb on + strandat 2637.772 kb on - strandat 2637.772 kb on - strandat 2637.772 kb on - strandat 2637.802 kb on + strand, within BWI76_RS12635at 2637.802 kb on + strand, within BWI76_RS12635at 2637.802 kb on + strand, within BWI76_RS12635at 2637.802 kb on - strand, within BWI76_RS12635at 2637.810 kb on + strand, within BWI76_RS12635at 2637.810 kb on - strand, within BWI76_RS12635at 2637.810 kb on - strandat 2637.810 kb on - strand, within BWI76_RS12635at 2637.813 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strandat 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strandat 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strandat 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strandat 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.823 kb on - strand, within BWI76_RS12635at 2637.823 kb on - strand, within BWI76_RS12635at 2637.823 kb on - strand, within BWI76_RS12635at 2637.825 kb on - strand, within BWI76_RS12635at 2638.023 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 3 mM
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2,635,194 - -0.7
2,635,196 - BWI76_RS12625 0.10 -0.7
2,635,270 - BWI76_RS12625 0.18 -0.3
2,635,287 + BWI76_RS12625 0.20 +0.6
2,635,319 - BWI76_RS12625 0.23 +1.1
2,635,365 + BWI76_RS12625 0.28 -0.9
2,635,425 - BWI76_RS12625 0.35 +1.4
2,635,438 - BWI76_RS12625 0.36 -0.0
2,635,558 + BWI76_RS12625 0.49 -0.0
2,635,698 - BWI76_RS12625 0.64 -0.1
2,635,709 + BWI76_RS12625 0.65 -1.4
2,636,086 - +0.1
2,636,165 - +1.3
2,636,446 - BWI76_RS12630 0.30 -0.3
2,636,560 + BWI76_RS12630 0.43 -0.1
2,636,583 + BWI76_RS12630 0.45 +0.8
2,636,583 + BWI76_RS12630 0.45 +1.0
2,636,583 + BWI76_RS12630 0.45 -0.2
2,636,854 + BWI76_RS12630 0.75 +0.5
2,636,862 - BWI76_RS12630 0.76 +0.3
2,636,975 - BWI76_RS12630 0.89 +0.8
2,637,033 + +0.5
2,637,139 - -0.1
2,637,139 - +0.3
2,637,141 + +1.2
2,637,171 - +0.1
2,637,249 + +1.7
2,637,275 + +0.6
2,637,299 - +0.6
2,637,375 + -0.7
2,637,375 + -0.3
2,637,375 + +1.2
2,637,375 + -0.9
2,637,375 + +1.3
2,637,375 + +0.5
2,637,375 + +0.3
2,637,375 + +0.6
2,637,375 + +0.1
2,637,375 + +0.1
2,637,375 + +0.1
2,637,375 + -0.7
2,637,375 + -0.2
2,637,375 + +0.8
2,637,375 + +0.9
2,637,375 + +0.4
2,637,383 - +0.3
2,637,383 - +1.3
2,637,383 - -0.9
2,637,383 - +0.2
2,637,383 - +0.3
2,637,383 - -1.1
2,637,383 - +1.9
2,637,383 - -0.2
2,637,394 + -0.4
2,637,397 - -0.1
2,637,432 + +0.8
2,637,471 - +1.9
2,637,478 - +0.3
2,637,520 - -0.9
2,637,533 + +0.8
2,637,589 + -0.2
2,637,589 + +0.9
2,637,602 + +0.2
2,637,610 - +0.3
2,637,613 + +0.0
2,637,613 + -0.2
2,637,646 + +1.4
2,637,656 + -0.2
2,637,717 + +0.3
2,637,758 + +0.4
2,637,764 + +1.2
2,637,772 - +1.6
2,637,772 - -0.2
2,637,772 - -0.9
2,637,802 + BWI76_RS12635 0.18 -0.7
2,637,802 + BWI76_RS12635 0.18 +2.6
2,637,802 + BWI76_RS12635 0.18 +1.1
2,637,802 - BWI76_RS12635 0.18 -1.5
2,637,810 + BWI76_RS12635 0.22 -0.4
2,637,810 - BWI76_RS12635 0.22 -0.1
2,637,810 - +0.3
2,637,810 - BWI76_RS12635 0.22 -0.1
2,637,813 + BWI76_RS12635 0.24 +1.5
2,637,815 + BWI76_RS12635 0.25 -0.0
2,637,815 + BWI76_RS12635 0.25 -0.8
2,637,815 + BWI76_RS12635 0.25 -0.0
2,637,815 + BWI76_RS12635 0.25 +0.0
2,637,815 + BWI76_RS12635 0.25 -0.9
2,637,815 + +0.9
2,637,815 + BWI76_RS12635 0.25 -0.4
2,637,815 + +1.3
2,637,815 + BWI76_RS12635 0.25 +0.4
2,637,815 + BWI76_RS12635 0.25 -0.1
2,637,815 + +0.9
2,637,815 + BWI76_RS12635 0.25 +0.1
2,637,815 + -1.9
2,637,815 + BWI76_RS12635 0.25 -1.3
2,637,815 + BWI76_RS12635 0.25 -0.0
2,637,815 + BWI76_RS12635 0.25 -0.2
2,637,815 + BWI76_RS12635 0.25 -0.0
2,637,815 + BWI76_RS12635 0.25 -0.3
2,637,815 + BWI76_RS12635 0.25 +0.4
2,637,815 + BWI76_RS12635 0.25 -1.0
2,637,815 + BWI76_RS12635 0.25 +0.4
2,637,815 + BWI76_RS12635 0.25 +1.7
2,637,815 + BWI76_RS12635 0.25 +0.6
2,637,823 - BWI76_RS12635 0.29 +2.9
2,637,823 - BWI76_RS12635 0.29 -0.7
2,637,823 - BWI76_RS12635 0.29 -0.5
2,637,825 - BWI76_RS12635 0.30 -1.9
2,638,023 + +0.9

Or see this region's nucleotide sequence