Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06905

Experiment: copper (II) chloride 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06900 and BWI76_RS06905 are separated by 74 nucleotidesBWI76_RS06905 and BWI76_RS06910 are separated by 105 nucleotidesBWI76_RS06910 and BWI76_RS06915 overlap by 4 nucleotidesBWI76_RS06915 and BWI76_RS06920 overlap by 4 nucleotides BWI76_RS06900: BWI76_RS06900 - phospholipase D, at 1,449,241 to 1,450,491 _RS06900 BWI76_RS06905: BWI76_RS06905 - Cu+ exporting ATPase, at 1,450,566 to 1,453,067 _RS06905 BWI76_RS06910: BWI76_RS06910 - transcriptional regulator, at 1,453,173 to 1,453,583 _RS06910 BWI76_RS06915: BWI76_RS06915 - membrane protein, at 1,453,580 to 1,454,044 _RS06915 BWI76_RS06920: BWI76_RS06920 - paraslipin, at 1,454,041 to 1,454,958 _RS06920 Position (kb) 1450 1451 1452 1453 1454Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1449.655 kb on + strand, within BWI76_RS06900at 1449.701 kb on - strand, within BWI76_RS06900at 1449.796 kb on + strand, within BWI76_RS06900at 1449.943 kb on - strand, within BWI76_RS06900at 1449.982 kb on + strand, within BWI76_RS06900at 1450.018 kb on + strand, within BWI76_RS06900at 1450.258 kb on + strand, within BWI76_RS06900at 1450.410 kb on + strandat 1450.560 kb on - strandat 1450.563 kb on + strandat 1450.563 kb on + strandat 1450.585 kb on - strandat 1450.602 kb on - strandat 1450.817 kb on + strand, within BWI76_RS06905at 1450.974 kb on - strand, within BWI76_RS06905at 1451.369 kb on - strand, within BWI76_RS06905at 1451.591 kb on - strand, within BWI76_RS06905at 1451.663 kb on + strand, within BWI76_RS06905at 1451.716 kb on + strand, within BWI76_RS06905at 1451.729 kb on - strand, within BWI76_RS06905at 1451.729 kb on - strand, within BWI76_RS06905at 1451.799 kb on + strand, within BWI76_RS06905at 1451.904 kb on - strand, within BWI76_RS06905at 1452.043 kb on + strand, within BWI76_RS06905at 1452.178 kb on + strand, within BWI76_RS06905at 1452.209 kb on + strand, within BWI76_RS06905at 1452.651 kb on - strand, within BWI76_RS06905at 1452.793 kb on + strand, within BWI76_RS06905at 1452.927 kb on + strandat 1452.961 kb on + strandat 1453.010 kb on + strandat 1453.043 kb on + strandat 1453.065 kb on - strandat 1453.410 kb on - strand, within BWI76_RS06910at 1453.612 kb on + strandat 1453.629 kb on - strandat 1453.636 kb on + strand, within BWI76_RS06915at 1453.644 kb on - strand, within BWI76_RS06915at 1453.724 kb on - strand, within BWI76_RS06915at 1453.839 kb on - strand, within BWI76_RS06915at 1453.897 kb on - strand, within BWI76_RS06915at 1454.033 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 3 mM
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1,449,655 + BWI76_RS06900 0.33 -0.2
1,449,701 - BWI76_RS06900 0.37 +0.1
1,449,796 + BWI76_RS06900 0.44 +0.5
1,449,943 - BWI76_RS06900 0.56 -1.0
1,449,982 + BWI76_RS06900 0.59 +0.2
1,450,018 + BWI76_RS06900 0.62 +0.1
1,450,258 + BWI76_RS06900 0.81 -0.5
1,450,410 + +0.6
1,450,560 - +0.6
1,450,563 + -0.0
1,450,563 + -0.5
1,450,585 - -0.2
1,450,602 - -3.6
1,450,817 + BWI76_RS06905 0.10 -4.0
1,450,974 - BWI76_RS06905 0.16 -3.0
1,451,369 - BWI76_RS06905 0.32 -3.3
1,451,591 - BWI76_RS06905 0.41 -2.9
1,451,663 + BWI76_RS06905 0.44 -4.2
1,451,716 + BWI76_RS06905 0.46 -2.8
1,451,729 - BWI76_RS06905 0.46 -4.2
1,451,729 - BWI76_RS06905 0.46 -5.6
1,451,799 + BWI76_RS06905 0.49 -1.4
1,451,904 - BWI76_RS06905 0.53 -2.9
1,452,043 + BWI76_RS06905 0.59 -5.8
1,452,178 + BWI76_RS06905 0.64 -2.5
1,452,209 + BWI76_RS06905 0.66 -3.7
1,452,651 - BWI76_RS06905 0.83 -3.2
1,452,793 + BWI76_RS06905 0.89 -4.5
1,452,927 + -2.7
1,452,961 + -3.7
1,453,010 + -2.6
1,453,043 + -2.0
1,453,065 - -3.1
1,453,410 - BWI76_RS06910 0.58 -4.6
1,453,612 + +0.2
1,453,629 - +0.3
1,453,636 + BWI76_RS06915 0.12 +0.1
1,453,644 - BWI76_RS06915 0.14 +0.2
1,453,724 - BWI76_RS06915 0.31 +0.5
1,453,839 - BWI76_RS06915 0.56 -0.7
1,453,897 - BWI76_RS06915 0.68 -0.2
1,454,033 - +0.4

Or see this region's nucleotide sequence