Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27545

Experiment: 4C survival; 672 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27540 and AO356_27545 are separated by 7 nucleotidesAO356_27545 and AO356_27550 are separated by 231 nucleotides AO356_27540: AO356_27540 - hemolysin secretion protein D, at 6,279,886 to 6,281,208 _27540 AO356_27545: AO356_27545 - peptidase, at 6,281,216 to 6,282,931 _27545 AO356_27550: AO356_27550 - 3-oxoacyl-ACP synthase, at 6,283,163 to 6,284,455 _27550 Position (kb) 6281 6282 6283Strain fitness (log2 ratio) -1 0 1 2at 6280.389 kb on - strand, within AO356_27540at 6280.580 kb on + strand, within AO356_27540at 6280.625 kb on + strand, within AO356_27540at 6280.626 kb on - strand, within AO356_27540at 6281.256 kb on - strandat 6281.256 kb on - strandat 6281.256 kb on - strandat 6281.487 kb on + strand, within AO356_27545at 6281.488 kb on - strand, within AO356_27545at 6281.510 kb on - strand, within AO356_27545at 6281.715 kb on + strand, within AO356_27545at 6281.716 kb on - strand, within AO356_27545at 6282.022 kb on - strand, within AO356_27545at 6282.150 kb on + strand, within AO356_27545at 6282.151 kb on - strand, within AO356_27545at 6282.151 kb on - strand, within AO356_27545at 6282.259 kb on + strand, within AO356_27545at 6282.498 kb on + strand, within AO356_27545at 6282.798 kb on + strandat 6282.798 kb on + strandat 6282.798 kb on + strandat 6282.814 kb on - strandat 6283.005 kb on + strandat 6283.115 kb on - strandat 6283.161 kb on - strandat 6283.161 kb on - strandat 6283.421 kb on - strand, within AO356_27550at 6283.513 kb on + strand, within AO356_27550at 6283.514 kb on - strand, within AO356_27550at 6283.514 kb on - strand, within AO356_27550

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
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6,280,389 - AO356_27540 0.38 -0.5
6,280,580 + AO356_27540 0.52 -0.6
6,280,625 + AO356_27540 0.56 +0.1
6,280,626 - AO356_27540 0.56 -1.5
6,281,256 - -0.1
6,281,256 - -0.3
6,281,256 - -0.1
6,281,487 + AO356_27545 0.16 +1.9
6,281,488 - AO356_27545 0.16 +0.5
6,281,510 - AO356_27545 0.17 -0.5
6,281,715 + AO356_27545 0.29 +0.0
6,281,716 - AO356_27545 0.29 +0.3
6,282,022 - AO356_27545 0.47 +0.3
6,282,150 + AO356_27545 0.54 +0.5
6,282,151 - AO356_27545 0.54 +0.2
6,282,151 - AO356_27545 0.54 -0.1
6,282,259 + AO356_27545 0.61 +0.4
6,282,498 + AO356_27545 0.75 -0.1
6,282,798 + +0.6
6,282,798 + +1.2
6,282,798 + +0.7
6,282,814 - -0.1
6,283,005 + +0.5
6,283,115 - +0.0
6,283,161 - -0.6
6,283,161 - -0.6
6,283,421 - AO356_27550 0.20 +0.1
6,283,513 + AO356_27550 0.27 +1.1
6,283,514 - AO356_27550 0.27 -1.0
6,283,514 - AO356_27550 0.27 -0.2

Or see this region's nucleotide sequence