Experiment: 4C survival; 672 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27535 and AO356_27540 are separated by 1 nucleotides AO356_27540 and AO356_27545 are separated by 7 nucleotides
AO356_27535: AO356_27535 - channel protein TolC, at 6,278,577 to 6,279,884
_27535
AO356_27540: AO356_27540 - hemolysin secretion protein D, at 6,279,886 to 6,281,208
_27540
AO356_27545: AO356_27545 - peptidase, at 6,281,216 to 6,282,931
_27545
Position (kb)
6279
6280
6281
6282 Strain fitness (log2 ratio)
-1
0
1
2 at 6279.413 kb on + strand, within AO356_27535 at 6279.532 kb on + strand, within AO356_27535 at 6279.559 kb on + strand, within AO356_27535 at 6279.560 kb on - strand, within AO356_27535 at 6279.560 kb on - strand, within AO356_27535 at 6279.592 kb on + strand, within AO356_27535 at 6279.592 kb on + strand, within AO356_27535 at 6279.593 kb on - strand, within AO356_27535 at 6279.635 kb on - strand, within AO356_27535 at 6279.821 kb on - strand at 6279.821 kb on - strand at 6279.821 kb on - strand at 6279.821 kb on - strand at 6280.056 kb on - strand, within AO356_27540 at 6280.056 kb on - strand, within AO356_27540 at 6280.389 kb on - strand, within AO356_27540 at 6280.580 kb on + strand, within AO356_27540 at 6280.625 kb on + strand, within AO356_27540 at 6280.626 kb on - strand, within AO356_27540 at 6281.256 kb on - strand at 6281.256 kb on - strand at 6281.256 kb on - strand at 6281.487 kb on + strand, within AO356_27545 at 6281.488 kb on - strand, within AO356_27545 at 6281.510 kb on - strand, within AO356_27545 at 6281.715 kb on + strand, within AO356_27545 at 6281.716 kb on - strand, within AO356_27545 at 6282.022 kb on - strand, within AO356_27545 at 6282.150 kb on + strand, within AO356_27545 at 6282.151 kb on - strand, within AO356_27545 at 6282.151 kb on - strand, within AO356_27545
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 672 hrs remove 6,279,413 + AO356_27535 0.64 -0.2 6,279,532 + AO356_27535 0.73 +0.0 6,279,559 + AO356_27535 0.75 +1.4 6,279,560 - AO356_27535 0.75 +0.2 6,279,560 - AO356_27535 0.75 +0.4 6,279,592 + AO356_27535 0.78 +1.0 6,279,592 + AO356_27535 0.78 +1.5 6,279,593 - AO356_27535 0.78 +0.2 6,279,635 - AO356_27535 0.81 +0.8 6,279,821 - -0.3 6,279,821 - +0.3 6,279,821 - -0.3 6,279,821 - -0.7 6,280,056 - AO356_27540 0.13 +0.1 6,280,056 - AO356_27540 0.13 -0.2 6,280,389 - AO356_27540 0.38 -0.5 6,280,580 + AO356_27540 0.52 -0.6 6,280,625 + AO356_27540 0.56 +0.1 6,280,626 - AO356_27540 0.56 -1.5 6,281,256 - -0.1 6,281,256 - -0.3 6,281,256 - -0.1 6,281,487 + AO356_27545 0.16 +1.9 6,281,488 - AO356_27545 0.16 +0.5 6,281,510 - AO356_27545 0.17 -0.5 6,281,715 + AO356_27545 0.29 +0.0 6,281,716 - AO356_27545 0.29 +0.3 6,282,022 - AO356_27545 0.47 +0.3 6,282,150 + AO356_27545 0.54 +0.5 6,282,151 - AO356_27545 0.54 +0.2 6,282,151 - AO356_27545 0.54 -0.1
Or see this region's nucleotide sequence