Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27540

Experiment: 4C survival; 672 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27535 and AO356_27540 are separated by 1 nucleotidesAO356_27540 and AO356_27545 are separated by 7 nucleotides AO356_27535: AO356_27535 - channel protein TolC, at 6,278,577 to 6,279,884 _27535 AO356_27540: AO356_27540 - hemolysin secretion protein D, at 6,279,886 to 6,281,208 _27540 AO356_27545: AO356_27545 - peptidase, at 6,281,216 to 6,282,931 _27545 Position (kb) 6279 6280 6281 6282Strain fitness (log2 ratio) -1 0 1 2at 6279.413 kb on + strand, within AO356_27535at 6279.532 kb on + strand, within AO356_27535at 6279.559 kb on + strand, within AO356_27535at 6279.560 kb on - strand, within AO356_27535at 6279.560 kb on - strand, within AO356_27535at 6279.592 kb on + strand, within AO356_27535at 6279.592 kb on + strand, within AO356_27535at 6279.593 kb on - strand, within AO356_27535at 6279.635 kb on - strand, within AO356_27535at 6279.821 kb on - strandat 6279.821 kb on - strandat 6279.821 kb on - strandat 6279.821 kb on - strandat 6280.056 kb on - strand, within AO356_27540at 6280.056 kb on - strand, within AO356_27540at 6280.389 kb on - strand, within AO356_27540at 6280.580 kb on + strand, within AO356_27540at 6280.625 kb on + strand, within AO356_27540at 6280.626 kb on - strand, within AO356_27540at 6281.256 kb on - strandat 6281.256 kb on - strandat 6281.256 kb on - strandat 6281.487 kb on + strand, within AO356_27545at 6281.488 kb on - strand, within AO356_27545at 6281.510 kb on - strand, within AO356_27545at 6281.715 kb on + strand, within AO356_27545at 6281.716 kb on - strand, within AO356_27545at 6282.022 kb on - strand, within AO356_27545at 6282.150 kb on + strand, within AO356_27545at 6282.151 kb on - strand, within AO356_27545at 6282.151 kb on - strand, within AO356_27545

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
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6,279,413 + AO356_27535 0.64 -0.2
6,279,532 + AO356_27535 0.73 +0.0
6,279,559 + AO356_27535 0.75 +1.4
6,279,560 - AO356_27535 0.75 +0.2
6,279,560 - AO356_27535 0.75 +0.4
6,279,592 + AO356_27535 0.78 +1.0
6,279,592 + AO356_27535 0.78 +1.5
6,279,593 - AO356_27535 0.78 +0.2
6,279,635 - AO356_27535 0.81 +0.8
6,279,821 - -0.3
6,279,821 - +0.3
6,279,821 - -0.3
6,279,821 - -0.7
6,280,056 - AO356_27540 0.13 +0.1
6,280,056 - AO356_27540 0.13 -0.2
6,280,389 - AO356_27540 0.38 -0.5
6,280,580 + AO356_27540 0.52 -0.6
6,280,625 + AO356_27540 0.56 +0.1
6,280,626 - AO356_27540 0.56 -1.5
6,281,256 - -0.1
6,281,256 - -0.3
6,281,256 - -0.1
6,281,487 + AO356_27545 0.16 +1.9
6,281,488 - AO356_27545 0.16 +0.5
6,281,510 - AO356_27545 0.17 -0.5
6,281,715 + AO356_27545 0.29 +0.0
6,281,716 - AO356_27545 0.29 +0.3
6,282,022 - AO356_27545 0.47 +0.3
6,282,150 + AO356_27545 0.54 +0.5
6,282,151 - AO356_27545 0.54 +0.2
6,282,151 - AO356_27545 0.54 -0.1

Or see this region's nucleotide sequence