Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27535

Experiment: 4C survival; 672 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27530 and AO356_27535 are separated by 122 nucleotidesAO356_27535 and AO356_27540 are separated by 1 nucleotides AO356_27530: AO356_27530 - hypothetical protein, at 6,274,720 to 6,278,454 _27530 AO356_27535: AO356_27535 - channel protein TolC, at 6,278,577 to 6,279,884 _27535 AO356_27540: AO356_27540 - hemolysin secretion protein D, at 6,279,886 to 6,281,208 _27540 Position (kb) 6278 6279 6280Strain fitness (log2 ratio) -1 0 1at 6277.759 kb on - strand, within AO356_27530at 6277.759 kb on - strand, within AO356_27530at 6277.792 kb on - strand, within AO356_27530at 6277.793 kb on + strand, within AO356_27530at 6277.884 kb on - strand, within AO356_27530at 6278.030 kb on + strand, within AO356_27530at 6278.030 kb on + strand, within AO356_27530at 6278.030 kb on + strand, within AO356_27530at 6278.031 kb on - strand, within AO356_27530at 6278.031 kb on - strand, within AO356_27530at 6278.031 kb on - strand, within AO356_27530at 6278.139 kb on + strandat 6278.289 kb on - strandat 6278.345 kb on + strandat 6278.346 kb on - strandat 6278.370 kb on - strandat 6278.370 kb on - strandat 6278.435 kb on + strandat 6278.502 kb on - strandat 6278.522 kb on + strandat 6278.523 kb on - strandat 6278.578 kb on + strandat 6278.579 kb on - strandat 6278.579 kb on - strandat 6278.649 kb on + strandat 6278.649 kb on + strandat 6278.649 kb on + strandat 6278.655 kb on + strandat 6278.655 kb on + strandat 6278.656 kb on - strandat 6278.674 kb on + strandat 6278.686 kb on + strandat 6278.854 kb on + strand, within AO356_27535at 6279.413 kb on + strand, within AO356_27535at 6279.532 kb on + strand, within AO356_27535at 6279.559 kb on + strand, within AO356_27535at 6279.560 kb on - strand, within AO356_27535at 6279.560 kb on - strand, within AO356_27535at 6279.592 kb on + strand, within AO356_27535at 6279.592 kb on + strand, within AO356_27535at 6279.593 kb on - strand, within AO356_27535at 6279.635 kb on - strand, within AO356_27535at 6279.821 kb on - strandat 6279.821 kb on - strandat 6279.821 kb on - strandat 6279.821 kb on - strandat 6280.056 kb on - strand, within AO356_27540at 6280.056 kb on - strand, within AO356_27540at 6280.389 kb on - strand, within AO356_27540at 6280.580 kb on + strand, within AO356_27540at 6280.625 kb on + strand, within AO356_27540at 6280.626 kb on - strand, within AO356_27540

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
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6,277,759 - AO356_27530 0.81 -0.1
6,277,759 - AO356_27530 0.81 +0.5
6,277,792 - AO356_27530 0.82 -0.0
6,277,793 + AO356_27530 0.82 -0.5
6,277,884 - AO356_27530 0.85 +0.5
6,278,030 + AO356_27530 0.89 -0.2
6,278,030 + AO356_27530 0.89 +0.9
6,278,030 + AO356_27530 0.89 -1.1
6,278,031 - AO356_27530 0.89 -0.6
6,278,031 - AO356_27530 0.89 -0.0
6,278,031 - AO356_27530 0.89 +0.2
6,278,139 + -0.2
6,278,289 - +0.1
6,278,345 + -0.3
6,278,346 - +0.3
6,278,370 - -0.1
6,278,370 - -0.1
6,278,435 + -0.9
6,278,502 - -1.5
6,278,522 + -0.5
6,278,523 - -0.4
6,278,578 + +0.0
6,278,579 - -0.2
6,278,579 - +0.3
6,278,649 + -0.2
6,278,649 + -0.1
6,278,649 + +0.2
6,278,655 + +0.1
6,278,655 + +0.8
6,278,656 - -0.3
6,278,674 + +0.5
6,278,686 + +0.5
6,278,854 + AO356_27535 0.21 -0.8
6,279,413 + AO356_27535 0.64 -0.2
6,279,532 + AO356_27535 0.73 +0.0
6,279,559 + AO356_27535 0.75 +1.4
6,279,560 - AO356_27535 0.75 +0.2
6,279,560 - AO356_27535 0.75 +0.4
6,279,592 + AO356_27535 0.78 +1.0
6,279,592 + AO356_27535 0.78 +1.5
6,279,593 - AO356_27535 0.78 +0.2
6,279,635 - AO356_27535 0.81 +0.8
6,279,821 - -0.3
6,279,821 - +0.3
6,279,821 - -0.3
6,279,821 - -0.7
6,280,056 - AO356_27540 0.13 +0.1
6,280,056 - AO356_27540 0.13 -0.2
6,280,389 - AO356_27540 0.38 -0.5
6,280,580 + AO356_27540 0.52 -0.6
6,280,625 + AO356_27540 0.56 +0.1
6,280,626 - AO356_27540 0.56 -1.5

Or see this region's nucleotide sequence