Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25010

Experiment: 4C survival; 672 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25005 and AO356_25010 are separated by 90 nucleotidesAO356_25010 and AO356_25015 overlap by 4 nucleotides AO356_25005: AO356_25005 - LysR family transcriptional regulator, at 5,664,679 to 5,665,575 _25005 AO356_25010: AO356_25010 - MFS transporter, at 5,665,666 to 5,667,081 _25010 AO356_25015: AO356_25015 - glucarate dehydratase, at 5,667,078 to 5,668,352 _25015 Position (kb) 5665 5666 5667 5668Strain fitness (log2 ratio) -1 0 1 2at 5664.726 kb on + strandat 5664.727 kb on - strandat 5664.992 kb on + strand, within AO356_25005at 5664.993 kb on - strand, within AO356_25005at 5665.110 kb on - strand, within AO356_25005at 5665.184 kb on + strand, within AO356_25005at 5665.184 kb on + strand, within AO356_25005at 5665.184 kb on + strand, within AO356_25005at 5665.184 kb on + strand, within AO356_25005at 5665.185 kb on - strand, within AO356_25005at 5665.185 kb on - strand, within AO356_25005at 5665.689 kb on + strandat 5665.694 kb on + strandat 5665.695 kb on - strandat 5665.754 kb on + strandat 5665.755 kb on - strandat 5665.789 kb on + strandat 5665.789 kb on + strandat 5665.789 kb on + strandat 5665.790 kb on - strandat 5666.026 kb on + strand, within AO356_25010at 5666.026 kb on + strand, within AO356_25010at 5666.026 kb on + strand, within AO356_25010at 5666.026 kb on + strand, within AO356_25010at 5666.026 kb on + strand, within AO356_25010at 5666.027 kb on - strand, within AO356_25010at 5666.027 kb on - strand, within AO356_25010at 5666.083 kb on + strand, within AO356_25010at 5666.084 kb on - strand, within AO356_25010at 5666.084 kb on - strand, within AO356_25010at 5666.084 kb on - strand, within AO356_25010at 5666.086 kb on + strand, within AO356_25010at 5666.087 kb on - strand, within AO356_25010at 5666.455 kb on + strand, within AO356_25010at 5666.455 kb on + strand, within AO356_25010at 5666.456 kb on - strand, within AO356_25010at 5666.479 kb on + strand, within AO356_25010at 5666.480 kb on - strand, within AO356_25010at 5666.480 kb on - strand, within AO356_25010at 5666.908 kb on + strand, within AO356_25010at 5666.909 kb on - strand, within AO356_25010at 5667.077 kb on + strandat 5667.078 kb on - strandat 5667.078 kb on - strandat 5667.078 kb on - strandat 5667.201 kb on + strandat 5667.201 kb on + strandat 5667.201 kb on + strandat 5667.205 kb on + strandat 5667.205 kb on + strandat 5667.205 kb on + strandat 5667.205 kb on + strandat 5667.205 kb on + strandat 5667.205 kb on + strandat 5667.205 kb on + strandat 5667.205 kb on + strandat 5667.206 kb on - strand, within AO356_25015at 5667.206 kb on - strand, within AO356_25015at 5667.206 kb on - strand, within AO356_25015at 5667.206 kb on - strand, within AO356_25015at 5667.206 kb on - strand, within AO356_25015at 5667.222 kb on + strand, within AO356_25015at 5667.222 kb on + strand, within AO356_25015at 5667.408 kb on + strand, within AO356_25015at 5667.450 kb on + strand, within AO356_25015at 5667.451 kb on - strand, within AO356_25015at 5667.517 kb on - strand, within AO356_25015at 5667.531 kb on + strand, within AO356_25015at 5667.531 kb on + strand, within AO356_25015at 5667.532 kb on - strand, within AO356_25015at 5667.807 kb on + strand, within AO356_25015at 5667.810 kb on + strand, within AO356_25015at 5667.810 kb on + strand, within AO356_25015at 5667.810 kb on + strand, within AO356_25015at 5667.810 kb on + strand, within AO356_25015at 5667.811 kb on - strand, within AO356_25015at 5667.884 kb on + strand, within AO356_25015at 5667.885 kb on - strand, within AO356_25015

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
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5,664,726 + -0.6
5,664,727 - +0.2
5,664,992 + AO356_25005 0.35 -0.0
5,664,993 - AO356_25005 0.35 -0.9
5,665,110 - AO356_25005 0.48 -0.8
5,665,184 + AO356_25005 0.56 +0.0
5,665,184 + AO356_25005 0.56 +0.4
5,665,184 + AO356_25005 0.56 +0.4
5,665,184 + AO356_25005 0.56 +0.6
5,665,185 - AO356_25005 0.56 -0.3
5,665,185 - AO356_25005 0.56 -0.1
5,665,689 + +0.7
5,665,694 + +0.0
5,665,695 - -0.8
5,665,754 + +1.2
5,665,755 - +0.6
5,665,789 + -0.2
5,665,789 + +0.2
5,665,789 + +1.0
5,665,790 - -0.1
5,666,026 + AO356_25010 0.25 -1.2
5,666,026 + AO356_25010 0.25 -0.5
5,666,026 + AO356_25010 0.25 -0.6
5,666,026 + AO356_25010 0.25 +1.8
5,666,026 + AO356_25010 0.25 +0.4
5,666,027 - AO356_25010 0.25 -0.7
5,666,027 - AO356_25010 0.25 +0.1
5,666,083 + AO356_25010 0.29 +0.4
5,666,084 - AO356_25010 0.30 -0.5
5,666,084 - AO356_25010 0.30 +0.3
5,666,084 - AO356_25010 0.30 +1.0
5,666,086 + AO356_25010 0.30 -0.5
5,666,087 - AO356_25010 0.30 +0.3
5,666,455 + AO356_25010 0.56 -0.4
5,666,455 + AO356_25010 0.56 -0.4
5,666,456 - AO356_25010 0.56 +0.2
5,666,479 + AO356_25010 0.57 -0.2
5,666,480 - AO356_25010 0.57 -0.6
5,666,480 - AO356_25010 0.57 +0.3
5,666,908 + AO356_25010 0.88 -0.8
5,666,909 - AO356_25010 0.88 +0.3
5,667,077 + -0.7
5,667,078 - +0.5
5,667,078 - +0.5
5,667,078 - +0.1
5,667,201 + +0.5
5,667,201 + +0.3
5,667,201 + +0.8
5,667,205 + +1.1
5,667,205 + +1.0
5,667,205 + +0.2
5,667,205 + -0.1
5,667,205 + +0.6
5,667,205 + +0.2
5,667,205 + +0.5
5,667,205 + -0.1
5,667,206 - AO356_25015 0.10 +0.9
5,667,206 - AO356_25015 0.10 -0.1
5,667,206 - AO356_25015 0.10 -0.1
5,667,206 - AO356_25015 0.10 -0.9
5,667,206 - AO356_25015 0.10 +0.6
5,667,222 + AO356_25015 0.11 -1.2
5,667,222 + AO356_25015 0.11 +0.4
5,667,408 + AO356_25015 0.26 +1.0
5,667,450 + AO356_25015 0.29 +0.4
5,667,451 - AO356_25015 0.29 -0.8
5,667,517 - AO356_25015 0.34 +0.3
5,667,531 + AO356_25015 0.36 +0.5
5,667,531 + AO356_25015 0.36 +0.4
5,667,532 - AO356_25015 0.36 +0.5
5,667,807 + AO356_25015 0.57 -0.1
5,667,810 + AO356_25015 0.57 +0.2
5,667,810 + AO356_25015 0.57 -0.0
5,667,810 + AO356_25015 0.57 -0.5
5,667,810 + AO356_25015 0.57 +0.2
5,667,811 - AO356_25015 0.57 +0.4
5,667,884 + AO356_25015 0.63 +0.8
5,667,885 - AO356_25015 0.63 +0.2

Or see this region's nucleotide sequence