Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24250

Experiment: 4C survival; 672 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24240 and AO356_24245 are separated by 235 nucleotidesAO356_24245 and AO356_24250 are separated by 42 nucleotidesAO356_24250 and AO356_24255 are separated by 2 nucleotides AO356_24240: AO356_24240 - ABC transporter ATP-binding protein, at 5,438,602 to 5,440,305 _24240 AO356_24245: AO356_24245 - siderophore-iron reductase FhuF, at 5,440,541 to 5,441,194 _24245 AO356_24250: AO356_24250 - ABC transporter ATP-binding protein, at 5,441,237 to 5,442,883 _24250 AO356_24255: AO356_24255 - non-ribosomal peptide synthetase, at 5,442,886 to 5,446,737 _24255 Position (kb) 5441 5442 5443Strain fitness (log2 ratio) -2 -1 0 1 2at 5440.389 kb on + strandat 5440.459 kb on - strandat 5440.614 kb on - strand, within AO356_24245at 5440.614 kb on - strand, within AO356_24245at 5440.778 kb on + strand, within AO356_24245at 5440.779 kb on - strand, within AO356_24245at 5441.032 kb on - strand, within AO356_24245at 5441.073 kb on - strand, within AO356_24245at 5441.165 kb on + strandat 5441.174 kb on + strandat 5441.174 kb on + strandat 5441.174 kb on + strandat 5441.175 kb on - strandat 5441.175 kb on - strandat 5441.175 kb on - strandat 5441.175 kb on - strandat 5441.175 kb on - strandat 5441.175 kb on - strandat 5441.175 kb on - strandat 5441.175 kb on - strandat 5441.175 kb on - strandat 5441.283 kb on - strandat 5441.283 kb on - strandat 5441.337 kb on + strandat 5441.406 kb on + strand, within AO356_24250at 5441.406 kb on + strand, within AO356_24250at 5441.563 kb on + strand, within AO356_24250at 5441.564 kb on - strand, within AO356_24250at 5441.814 kb on - strand, within AO356_24250at 5441.887 kb on - strand, within AO356_24250at 5441.890 kb on + strand, within AO356_24250at 5441.891 kb on - strand, within AO356_24250at 5442.080 kb on - strand, within AO356_24250at 5442.082 kb on - strand, within AO356_24250at 5442.153 kb on + strand, within AO356_24250at 5442.153 kb on + strand, within AO356_24250at 5442.153 kb on + strand, within AO356_24250at 5442.153 kb on + strand, within AO356_24250at 5442.154 kb on - strand, within AO356_24250at 5442.154 kb on - strand, within AO356_24250at 5442.189 kb on + strand, within AO356_24250at 5442.190 kb on - strand, within AO356_24250at 5442.463 kb on - strand, within AO356_24250at 5442.746 kb on + strandat 5442.747 kb on - strandat 5442.961 kb on - strandat 5442.961 kb on - strandat 5443.125 kb on + strandat 5443.125 kb on + strandat 5443.125 kb on + strandat 5443.126 kb on - strandat 5443.126 kb on - strandat 5443.523 kb on + strand, within AO356_24255at 5443.523 kb on + strand, within AO356_24255at 5443.524 kb on - strand, within AO356_24255

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
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5,440,389 + -2.0
5,440,459 - -0.0
5,440,614 - AO356_24245 0.11 -1.5
5,440,614 - AO356_24245 0.11 -2.2
5,440,778 + AO356_24245 0.36 -0.7
5,440,779 - AO356_24245 0.36 +0.0
5,441,032 - AO356_24245 0.75 +0.1
5,441,073 - AO356_24245 0.81 -1.1
5,441,165 + -1.7
5,441,174 + -0.1
5,441,174 + -0.5
5,441,174 + -0.4
5,441,175 - +0.8
5,441,175 - +1.5
5,441,175 - +0.3
5,441,175 - +0.2
5,441,175 - -0.9
5,441,175 - -1.3
5,441,175 - +1.8
5,441,175 - +0.5
5,441,175 - +0.4
5,441,283 - +0.3
5,441,283 - -0.2
5,441,337 + +0.3
5,441,406 + AO356_24250 0.10 -0.7
5,441,406 + AO356_24250 0.10 -1.2
5,441,563 + AO356_24250 0.20 +0.7
5,441,564 - AO356_24250 0.20 -0.4
5,441,814 - AO356_24250 0.35 -0.0
5,441,887 - AO356_24250 0.39 +0.3
5,441,890 + AO356_24250 0.40 -0.3
5,441,891 - AO356_24250 0.40 -0.2
5,442,080 - AO356_24250 0.51 -0.9
5,442,082 - AO356_24250 0.51 -0.8
5,442,153 + AO356_24250 0.56 +0.6
5,442,153 + AO356_24250 0.56 +0.6
5,442,153 + AO356_24250 0.56 +0.0
5,442,153 + AO356_24250 0.56 +0.3
5,442,154 - AO356_24250 0.56 +1.2
5,442,154 - AO356_24250 0.56 -0.3
5,442,189 + AO356_24250 0.58 -0.1
5,442,190 - AO356_24250 0.58 -1.0
5,442,463 - AO356_24250 0.74 -0.3
5,442,746 + -0.1
5,442,747 - -0.6
5,442,961 - +0.5
5,442,961 - +1.4
5,443,125 + +0.8
5,443,125 + +0.7
5,443,125 + +0.1
5,443,126 - +0.5
5,443,126 - +0.4
5,443,523 + AO356_24255 0.17 -0.3
5,443,523 + AO356_24255 0.17 +0.3
5,443,524 - AO356_24255 0.17 +0.0

Or see this region's nucleotide sequence