Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21910

Experiment: 4C survival; 672 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21905 and AO356_21910 are separated by 35 nucleotidesAO356_21910 and AO356_21915 are separated by 36 nucleotides AO356_21905: AO356_21905 - monooxygenase, at 4,901,091 to 4,902,419 _21905 AO356_21910: AO356_21910 - phosphate ABC transporter substrate-binding protein, at 4,902,455 to 4,903,237 _21910 AO356_21915: AO356_21915 - chemotaxis protein, at 4,903,274 to 4,905,217 _21915 Position (kb) 4902 4903 4904Strain fitness (log2 ratio) -1 0 1 2at 4901.475 kb on - strand, within AO356_21905at 4901.841 kb on + strand, within AO356_21905at 4901.841 kb on + strand, within AO356_21905at 4901.842 kb on - strand, within AO356_21905at 4902.015 kb on + strand, within AO356_21905at 4902.016 kb on - strand, within AO356_21905at 4902.016 kb on - strand, within AO356_21905at 4902.016 kb on - strand, within AO356_21905at 4902.124 kb on - strand, within AO356_21905at 4902.152 kb on - strand, within AO356_21905at 4902.180 kb on - strand, within AO356_21905at 4902.209 kb on + strand, within AO356_21905at 4902.210 kb on - strand, within AO356_21905at 4902.234 kb on + strand, within AO356_21905at 4902.234 kb on + strand, within AO356_21905at 4902.235 kb on - strand, within AO356_21905at 4902.235 kb on - strand, within AO356_21905at 4902.258 kb on + strand, within AO356_21905at 4902.258 kb on + strand, within AO356_21905at 4902.259 kb on - strand, within AO356_21905at 4902.259 kb on - strand, within AO356_21905at 4902.259 kb on - strand, within AO356_21905at 4902.354 kb on + strandat 4902.354 kb on + strandat 4902.454 kb on + strandat 4902.468 kb on + strandat 4902.469 kb on - strandat 4902.476 kb on + strandat 4902.476 kb on + strandat 4902.476 kb on + strandat 4902.476 kb on + strandat 4902.498 kb on + strandat 4902.498 kb on + strandat 4902.666 kb on + strand, within AO356_21910at 4902.680 kb on + strand, within AO356_21910at 4902.680 kb on + strand, within AO356_21910at 4902.681 kb on - strand, within AO356_21910at 4902.681 kb on - strand, within AO356_21910at 4902.694 kb on + strand, within AO356_21910at 4902.730 kb on + strand, within AO356_21910at 4902.730 kb on + strand, within AO356_21910at 4902.730 kb on + strand, within AO356_21910at 4902.731 kb on - strand, within AO356_21910at 4902.731 kb on - strand, within AO356_21910at 4902.937 kb on + strand, within AO356_21910at 4902.937 kb on + strand, within AO356_21910at 4902.953 kb on + strand, within AO356_21910at 4902.953 kb on + strand, within AO356_21910at 4902.953 kb on + strand, within AO356_21910at 4902.953 kb on + strand, within AO356_21910at 4902.953 kb on + strand, within AO356_21910at 4902.953 kb on + strand, within AO356_21910at 4902.953 kb on + strand, within AO356_21910at 4902.953 kb on + strand, within AO356_21910at 4902.954 kb on - strand, within AO356_21910at 4902.954 kb on - strand, within AO356_21910at 4902.954 kb on - strand, within AO356_21910at 4902.959 kb on + strand, within AO356_21910at 4902.960 kb on - strand, within AO356_21910at 4902.960 kb on - strand, within AO356_21910at 4902.960 kb on - strand, within AO356_21910at 4903.037 kb on + strand, within AO356_21910at 4903.037 kb on + strand, within AO356_21910at 4903.037 kb on + strand, within AO356_21910at 4903.037 kb on + strand, within AO356_21910at 4903.037 kb on + strand, within AO356_21910at 4903.037 kb on + strand, within AO356_21910at 4903.038 kb on - strand, within AO356_21910at 4903.038 kb on - strand, within AO356_21910at 4903.173 kb on - strandat 4903.173 kb on - strandat 4903.173 kb on - strandat 4903.190 kb on + strandat 4903.191 kb on - strandat 4903.191 kb on - strandat 4903.227 kb on + strandat 4903.227 kb on + strandat 4903.227 kb on + strandat 4903.227 kb on + strandat 4903.227 kb on + strandat 4903.228 kb on - strandat 4903.228 kb on - strandat 4903.276 kb on - strandat 4903.276 kb on - strandat 4903.276 kb on - strandat 4903.319 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
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4,901,475 - AO356_21905 0.29 -0.0
4,901,841 + AO356_21905 0.56 -0.6
4,901,841 + AO356_21905 0.56 +0.5
4,901,842 - AO356_21905 0.57 +0.6
4,902,015 + AO356_21905 0.70 -0.5
4,902,016 - AO356_21905 0.70 -0.7
4,902,016 - AO356_21905 0.70 +0.9
4,902,016 - AO356_21905 0.70 -0.0
4,902,124 - AO356_21905 0.78 -0.2
4,902,152 - AO356_21905 0.80 +0.6
4,902,180 - AO356_21905 0.82 -0.8
4,902,209 + AO356_21905 0.84 +0.3
4,902,210 - AO356_21905 0.84 +0.4
4,902,234 + AO356_21905 0.86 -0.6
4,902,234 + AO356_21905 0.86 -0.5
4,902,235 - AO356_21905 0.86 -0.4
4,902,235 - AO356_21905 0.86 -0.6
4,902,258 + AO356_21905 0.88 -0.4
4,902,258 + AO356_21905 0.88 -0.6
4,902,259 - AO356_21905 0.88 +0.3
4,902,259 - AO356_21905 0.88 +1.2
4,902,259 - AO356_21905 0.88 +0.6
4,902,354 + -0.2
4,902,354 + -0.0
4,902,454 + -0.1
4,902,468 + -0.6
4,902,469 - -0.9
4,902,476 + +0.4
4,902,476 + +0.2
4,902,476 + +0.1
4,902,476 + -0.2
4,902,498 + +0.4
4,902,498 + +0.4
4,902,666 + AO356_21910 0.27 -0.5
4,902,680 + AO356_21910 0.29 +0.1
4,902,680 + AO356_21910 0.29 +0.4
4,902,681 - AO356_21910 0.29 +0.7
4,902,681 - AO356_21910 0.29 +1.2
4,902,694 + AO356_21910 0.31 -0.7
4,902,730 + AO356_21910 0.35 -0.6
4,902,730 + AO356_21910 0.35 +0.2
4,902,730 + AO356_21910 0.35 +0.1
4,902,731 - AO356_21910 0.35 -1.2
4,902,731 - AO356_21910 0.35 -1.1
4,902,937 + AO356_21910 0.62 +0.3
4,902,937 + AO356_21910 0.62 +0.6
4,902,953 + AO356_21910 0.64 -0.2
4,902,953 + AO356_21910 0.64 -0.9
4,902,953 + AO356_21910 0.64 -0.0
4,902,953 + AO356_21910 0.64 -0.7
4,902,953 + AO356_21910 0.64 +0.5
4,902,953 + AO356_21910 0.64 +0.1
4,902,953 + AO356_21910 0.64 -0.1
4,902,953 + AO356_21910 0.64 -0.4
4,902,954 - AO356_21910 0.64 -0.8
4,902,954 - AO356_21910 0.64 -0.7
4,902,954 - AO356_21910 0.64 -1.0
4,902,959 + AO356_21910 0.64 -0.0
4,902,960 - AO356_21910 0.64 +0.4
4,902,960 - AO356_21910 0.64 +0.4
4,902,960 - AO356_21910 0.64 +0.7
4,903,037 + AO356_21910 0.74 +0.1
4,903,037 + AO356_21910 0.74 +0.0
4,903,037 + AO356_21910 0.74 +0.4
4,903,037 + AO356_21910 0.74 +0.2
4,903,037 + AO356_21910 0.74 -0.9
4,903,037 + AO356_21910 0.74 -0.1
4,903,038 - AO356_21910 0.74 -1.0
4,903,038 - AO356_21910 0.74 +0.8
4,903,173 - -0.1
4,903,173 - +0.4
4,903,173 - +0.1
4,903,190 + +0.4
4,903,191 - +0.4
4,903,191 - +0.8
4,903,227 + +0.7
4,903,227 + +0.8
4,903,227 + +1.8
4,903,227 + +0.1
4,903,227 + +0.5
4,903,228 - +0.5
4,903,228 - -0.9
4,903,276 - +0.3
4,903,276 - -0.9
4,903,276 - +0.3
4,903,319 - -0.0

Or see this region's nucleotide sequence