Experiment: 4C survival; 672 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14005 and AO356_14010 are separated by 311 nucleotides AO356_14010 and AO356_14015 are separated by 106 nucleotides AO356_14015 and AO356_14020 are separated by 303 nucleotides AO356_14020 and AO356_14025 are separated by 0 nucleotides
AO356_14005: AO356_14005 - cold-shock protein, at 3,180,950 to 3,181,162
_14005
AO356_14010: AO356_14010 - hypothetical protein, at 3,181,474 to 3,182,049
_14010
AO356_14015: AO356_14015 - hypothetical protein, at 3,182,156 to 3,182,578
_14015
AO356_14020: AO356_14020 - hypothetical protein, at 3,182,882 to 3,183,451
_14020
AO356_14025: AO356_14025 - acyltransferase, at 3,183,452 to 3,184,339
_14025
Position (kb)
3182
3183 Strain fitness (log2 ratio)
-2
-1
0
1 at 3181.189 kb on + strand at 3181.261 kb on + strand at 3181.299 kb on + strand at 3181.300 kb on - strand at 3181.316 kb on + strand at 3181.381 kb on + strand at 3181.381 kb on + strand at 3181.399 kb on + strand at 3181.476 kb on - strand at 3181.550 kb on + strand, within AO356_14010 at 3181.550 kb on + strand, within AO356_14010 at 3181.550 kb on + strand, within AO356_14010 at 3181.619 kb on + strand, within AO356_14010 at 3181.619 kb on + strand, within AO356_14010 at 3181.619 kb on + strand, within AO356_14010 at 3181.619 kb on + strand, within AO356_14010 at 3181.619 kb on + strand, within AO356_14010 at 3181.620 kb on - strand, within AO356_14010 at 3181.620 kb on - strand, within AO356_14010 at 3181.620 kb on - strand, within AO356_14010 at 3181.620 kb on - strand, within AO356_14010 at 3181.664 kb on + strand, within AO356_14010 at 3181.664 kb on + strand, within AO356_14010 at 3181.665 kb on - strand, within AO356_14010 at 3181.665 kb on - strand, within AO356_14010 at 3181.721 kb on + strand, within AO356_14010 at 3181.721 kb on + strand, within AO356_14010 at 3181.722 kb on - strand, within AO356_14010 at 3181.722 kb on - strand, within AO356_14010 at 3181.722 kb on - strand, within AO356_14010 at 3181.722 kb on - strand, within AO356_14010 at 3181.722 kb on - strand, within AO356_14010 at 3182.080 kb on + strand at 3182.080 kb on + strand at 3182.081 kb on - strand at 3182.161 kb on - strand at 3182.161 kb on - strand at 3182.161 kb on - strand at 3182.161 kb on - strand at 3182.161 kb on - strand at 3182.176 kb on - strand at 3182.295 kb on + strand, within AO356_14015 at 3182.296 kb on - strand, within AO356_14015 at 3182.296 kb on - strand, within AO356_14015 at 3182.358 kb on + strand, within AO356_14015 at 3182.358 kb on + strand, within AO356_14015 at 3182.358 kb on + strand, within AO356_14015 at 3182.359 kb on - strand, within AO356_14015 at 3182.359 kb on - strand, within AO356_14015 at 3182.359 kb on - strand, within AO356_14015 at 3182.359 kb on - strand, within AO356_14015 at 3182.452 kb on - strand, within AO356_14015 at 3182.452 kb on - strand, within AO356_14015 at 3182.452 kb on - strand, within AO356_14015 at 3182.452 kb on - strand, within AO356_14015 at 3182.452 kb on - strand, within AO356_14015 at 3182.452 kb on - strand, within AO356_14015 at 3182.452 kb on - strand, within AO356_14015 at 3182.507 kb on + strand, within AO356_14015 at 3182.508 kb on - strand, within AO356_14015 at 3182.567 kb on + strand at 3182.568 kb on - strand at 3182.633 kb on + strand at 3182.652 kb on + strand at 3182.724 kb on + strand at 3182.740 kb on + strand at 3182.741 kb on - strand at 3182.788 kb on + strand at 3182.788 kb on + strand at 3182.788 kb on + strand at 3182.788 kb on + strand at 3182.788 kb on + strand at 3182.788 kb on + strand at 3182.789 kb on - strand at 3182.789 kb on - strand at 3182.789 kb on - strand at 3182.789 kb on - strand at 3182.789 kb on - strand at 3182.789 kb on - strand at 3182.789 kb on - strand at 3182.795 kb on - strand at 3182.876 kb on + strand at 3182.876 kb on + strand at 3182.876 kb on + strand at 3182.876 kb on + strand at 3182.876 kb on + strand at 3182.877 kb on - strand at 3182.877 kb on - strand at 3182.877 kb on - strand at 3183.380 kb on + strand, within AO356_14020 at 3183.381 kb on - strand, within AO356_14020 at 3183.381 kb on - strand, within AO356_14020 at 3183.430 kb on + strand at 3183.430 kb on + strand at 3183.431 kb on - strand at 3183.431 kb on - strand at 3183.481 kb on + strand at 3183.481 kb on + strand at 3183.481 kb on + strand at 3183.481 kb on + strand at 3183.481 kb on + strand at 3183.482 kb on - strand at 3183.482 kb on - strand at 3183.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 672 hrs remove 3,181,189 + -0.1 3,181,261 + -0.0 3,181,299 + +0.1 3,181,300 - +0.6 3,181,316 + -0.3 3,181,381 + -1.1 3,181,381 + +1.0 3,181,399 + +0.1 3,181,476 - -0.0 3,181,550 + AO356_14010 0.13 -0.1 3,181,550 + AO356_14010 0.13 -0.9 3,181,550 + AO356_14010 0.13 -1.1 3,181,619 + AO356_14010 0.25 +1.3 3,181,619 + AO356_14010 0.25 +0.2 3,181,619 + AO356_14010 0.25 -0.7 3,181,619 + AO356_14010 0.25 +0.0 3,181,619 + AO356_14010 0.25 +0.5 3,181,620 - AO356_14010 0.25 -0.9 3,181,620 - AO356_14010 0.25 +0.7 3,181,620 - AO356_14010 0.25 +0.2 3,181,620 - AO356_14010 0.25 -0.5 3,181,664 + AO356_14010 0.33 +0.2 3,181,664 + AO356_14010 0.33 -0.6 3,181,665 - AO356_14010 0.33 -0.6 3,181,665 - AO356_14010 0.33 -0.1 3,181,721 + AO356_14010 0.43 -0.2 3,181,721 + AO356_14010 0.43 +0.9 3,181,722 - AO356_14010 0.43 -0.4 3,181,722 - AO356_14010 0.43 +0.8 3,181,722 - AO356_14010 0.43 -2.5 3,181,722 - AO356_14010 0.43 -0.6 3,181,722 - AO356_14010 0.43 -0.3 3,182,080 + +0.1 3,182,080 + -0.1 3,182,081 - +0.0 3,182,161 - +0.5 3,182,161 - -0.8 3,182,161 - -0.3 3,182,161 - -0.5 3,182,161 - +0.5 3,182,176 - -0.2 3,182,295 + AO356_14015 0.33 -0.1 3,182,296 - AO356_14015 0.33 -1.7 3,182,296 - AO356_14015 0.33 +0.2 3,182,358 + AO356_14015 0.48 +0.2 3,182,358 + AO356_14015 0.48 +1.3 3,182,358 + AO356_14015 0.48 +1.3 3,182,359 - AO356_14015 0.48 -1.2 3,182,359 - AO356_14015 0.48 +0.2 3,182,359 - AO356_14015 0.48 -0.3 3,182,359 - AO356_14015 0.48 +0.7 3,182,452 - AO356_14015 0.70 -0.2 3,182,452 - AO356_14015 0.70 +0.5 3,182,452 - AO356_14015 0.70 -0.0 3,182,452 - AO356_14015 0.70 -1.5 3,182,452 - AO356_14015 0.70 +0.3 3,182,452 - AO356_14015 0.70 -0.5 3,182,452 - AO356_14015 0.70 -0.3 3,182,507 + AO356_14015 0.83 -0.8 3,182,508 - AO356_14015 0.83 -0.2 3,182,567 + -1.4 3,182,568 - +1.0 3,182,633 + +0.3 3,182,652 + +0.7 3,182,724 + -0.2 3,182,740 + -0.7 3,182,741 - +0.3 3,182,788 + -0.4 3,182,788 + -0.5 3,182,788 + +0.2 3,182,788 + +1.2 3,182,788 + +0.3 3,182,788 + +0.6 3,182,789 - +1.0 3,182,789 - +0.9 3,182,789 - +0.7 3,182,789 - +1.1 3,182,789 - +0.7 3,182,789 - +1.2 3,182,789 - +0.6 3,182,795 - +0.9 3,182,876 + +0.0 3,182,876 + +0.8 3,182,876 + -0.5 3,182,876 + +0.5 3,182,876 + -0.2 3,182,877 - +1.1 3,182,877 - +1.7 3,182,877 - +0.4 3,183,380 + AO356_14020 0.87 -0.4 3,183,381 - AO356_14020 0.88 -0.0 3,183,381 - AO356_14020 0.88 -1.1 3,183,430 + +0.2 3,183,430 + +0.6 3,183,431 - -0.2 3,183,431 - -0.8 3,183,481 + -0.0 3,183,481 + +0.1 3,183,481 + -1.0 3,183,481 + +0.8 3,183,481 + -0.5 3,183,482 - +0.5 3,183,482 - +0.7 3,183,482 - +0.3
Or see this region's nucleotide sequence