Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09765

Experiment: 4C survival; 672 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09750 and AO356_09755 are separated by 203 nucleotidesAO356_09755 and AO356_09760 are separated by 39 nucleotidesAO356_09760 and AO356_09765 are separated by 1 nucleotidesAO356_09765 and AO356_09770 are separated by 152 nucleotides AO356_09750: AO356_09750 - rRNA methylase, at 2,212,096 to 2,212,551 _09750 AO356_09755: AO356_09755 - preprotein translocase subunit SecB, at 2,212,755 to 2,213,237 _09755 AO356_09760: AO356_09760 - glutaredoxin, at 2,213,277 to 2,213,531 _09760 AO356_09765: AO356_09765 - sulfurtransferase, at 2,213,533 to 2,213,946 _09765 AO356_09770: AO356_09770 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 2,214,099 to 2,215,628 _09770 Position (kb) 2213 2214Strain fitness (log2 ratio) -3 -2 -1 0 1at 2212.737 kb on - strandat 2212.737 kb on - strandat 2212.749 kb on - strandat 2212.749 kb on - strandat 2212.749 kb on - strandat 2212.757 kb on - strandat 2212.807 kb on + strand, within AO356_09755at 2212.808 kb on - strand, within AO356_09755at 2213.097 kb on + strand, within AO356_09755at 2213.098 kb on - strand, within AO356_09755at 2213.167 kb on + strand, within AO356_09755at 2213.167 kb on + strand, within AO356_09755at 2213.167 kb on + strand, within AO356_09755at 2213.167 kb on + strand, within AO356_09755at 2213.167 kb on + strand, within AO356_09755at 2213.167 kb on + strand, within AO356_09755at 2213.167 kb on + strand, within AO356_09755at 2213.167 kb on + strand, within AO356_09755at 2213.168 kb on - strand, within AO356_09755at 2213.168 kb on - strand, within AO356_09755at 2213.168 kb on - strand, within AO356_09755at 2213.168 kb on - strand, within AO356_09755at 2213.251 kb on + strandat 2213.251 kb on + strandat 2213.252 kb on - strandat 2213.252 kb on - strandat 2213.266 kb on + strandat 2213.492 kb on - strand, within AO356_09760at 2213.492 kb on - strand, within AO356_09760at 2213.500 kb on + strand, within AO356_09760at 2213.500 kb on + strand, within AO356_09760at 2213.500 kb on + strand, within AO356_09760at 2213.500 kb on + strand, within AO356_09760at 2213.501 kb on - strand, within AO356_09760at 2213.512 kb on + strandat 2213.598 kb on + strand, within AO356_09765at 2213.759 kb on + strand, within AO356_09765at 2213.759 kb on + strand, within AO356_09765at 2213.760 kb on - strand, within AO356_09765at 2213.895 kb on + strand, within AO356_09765at 2213.909 kb on + strandat 2213.909 kb on + strandat 2213.909 kb on + strandat 2213.909 kb on + strandat 2213.909 kb on + strandat 2213.909 kb on + strandat 2213.909 kb on + strandat 2213.910 kb on - strandat 2213.910 kb on - strandat 2213.910 kb on - strandat 2213.917 kb on - strandat 2213.968 kb on - strandat 2213.982 kb on + strandat 2213.982 kb on + strandat 2213.983 kb on - strandat 2213.983 kb on - strandat 2213.983 kb on - strandat 2213.984 kb on + strandat 2213.984 kb on + strandat 2213.984 kb on + strandat 2213.984 kb on + strandat 2213.984 kb on + strandat 2213.984 kb on + strandat 2213.984 kb on + strandat 2213.984 kb on + strandat 2213.984 kb on + strandat 2213.984 kb on + strandat 2213.984 kb on + strandat 2213.984 kb on + strandat 2213.984 kb on + strandat 2213.984 kb on + strandat 2213.985 kb on - strandat 2213.985 kb on - strandat 2213.985 kb on - strandat 2213.985 kb on - strandat 2214.038 kb on + strandat 2214.038 kb on + strandat 2214.038 kb on + strandat 2214.039 kb on - strandat 2214.039 kb on - strandat 2214.039 kb on - strandat 2214.039 kb on - strandat 2214.044 kb on + strandat 2214.044 kb on + strandat 2214.045 kb on - strandat 2214.045 kb on - strandat 2214.045 kb on - strandat 2214.104 kb on + strandat 2214.104 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
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2,212,737 - -0.6
2,212,737 - -0.2
2,212,749 - +0.7
2,212,749 - -0.4
2,212,749 - -0.5
2,212,757 - +0.2
2,212,807 + AO356_09755 0.11 -1.9
2,212,808 - AO356_09755 0.11 -1.5
2,213,097 + AO356_09755 0.71 -2.1
2,213,098 - AO356_09755 0.71 -1.2
2,213,167 + AO356_09755 0.85 -0.9
2,213,167 + AO356_09755 0.85 -1.9
2,213,167 + AO356_09755 0.85 -1.5
2,213,167 + AO356_09755 0.85 -2.1
2,213,167 + AO356_09755 0.85 +0.3
2,213,167 + AO356_09755 0.85 -2.5
2,213,167 + AO356_09755 0.85 -1.3
2,213,167 + AO356_09755 0.85 -0.7
2,213,168 - AO356_09755 0.86 -1.9
2,213,168 - AO356_09755 0.86 -1.7
2,213,168 - AO356_09755 0.86 -2.5
2,213,168 - AO356_09755 0.86 -1.8
2,213,251 + -0.2
2,213,251 + -2.2
2,213,252 - +0.3
2,213,252 - -0.1
2,213,266 + -3.2
2,213,492 - AO356_09760 0.84 -0.9
2,213,492 - AO356_09760 0.84 +0.1
2,213,500 + AO356_09760 0.87 -0.2
2,213,500 + AO356_09760 0.87 -0.2
2,213,500 + AO356_09760 0.87 -0.8
2,213,500 + AO356_09760 0.87 -1.6
2,213,501 - AO356_09760 0.88 +0.3
2,213,512 + -0.5
2,213,598 + AO356_09765 0.16 -1.0
2,213,759 + AO356_09765 0.55 -1.7
2,213,759 + AO356_09765 0.55 -1.9
2,213,760 - AO356_09765 0.55 +0.4
2,213,895 + AO356_09765 0.87 -2.4
2,213,909 + -0.5
2,213,909 + -1.8
2,213,909 + -1.7
2,213,909 + -1.2
2,213,909 + -0.5
2,213,909 + -1.6
2,213,909 + -0.5
2,213,910 - -1.5
2,213,910 - -1.6
2,213,910 - -1.0
2,213,917 - -0.4
2,213,968 - -1.9
2,213,982 + -2.5
2,213,982 + -0.9
2,213,983 - +0.4
2,213,983 - -0.5
2,213,983 - -0.1
2,213,984 + -0.7
2,213,984 + +0.9
2,213,984 + -1.0
2,213,984 + +0.6
2,213,984 + +1.1
2,213,984 + +0.4
2,213,984 + -0.0
2,213,984 + -0.3
2,213,984 + -0.4
2,213,984 + +0.3
2,213,984 + +0.4
2,213,984 + -0.8
2,213,984 + +0.8
2,213,984 + +0.2
2,213,985 - +0.2
2,213,985 - -1.8
2,213,985 - +1.1
2,213,985 - +1.2
2,214,038 + -0.9
2,214,038 + -0.5
2,214,038 + -0.6
2,214,039 - -1.5
2,214,039 - +0.6
2,214,039 - +0.6
2,214,039 - +0.9
2,214,044 + +0.2
2,214,044 + +1.3
2,214,045 - -0.9
2,214,045 - -0.6
2,214,045 - -0.0
2,214,104 + -0.6
2,214,104 + -0.9

Or see this region's nucleotide sequence