Experiment: 4C survival; 672 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07350 and AO356_07355 are separated by 317 nucleotides AO356_07355 and AO356_07360 overlap by 4 nucleotides AO356_07360 and AO356_07365 are separated by 64 nucleotides
AO356_07350: AO356_07350 - chemotaxis protein, at 1,628,392 to 1,630,422
_07350
AO356_07355: AO356_07355 - hypothetical protein, at 1,630,740 to 1,631,576
_07355
AO356_07360: AO356_07360 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 1,631,573 to 1,632,133
_07360
AO356_07365: AO356_07365 - thymidine phosphorylase, at 1,632,198 to 1,634,411
_07365
Position (kb)
1630
1631
1632 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1630.333 kb on + strand at 1630.334 kb on - strand at 1630.438 kb on + strand at 1630.439 kb on - strand at 1630.447 kb on + strand at 1630.447 kb on + strand at 1630.447 kb on + strand at 1630.448 kb on - strand at 1630.448 kb on - strand at 1630.448 kb on - strand at 1630.448 kb on - strand at 1630.448 kb on - strand at 1630.454 kb on - strand at 1630.454 kb on - strand at 1630.454 kb on - strand at 1630.454 kb on - strand at 1630.487 kb on + strand at 1630.506 kb on + strand at 1630.506 kb on + strand at 1630.506 kb on + strand at 1630.507 kb on - strand at 1630.507 kb on - strand at 1630.507 kb on - strand at 1630.507 kb on - strand at 1630.507 kb on - strand at 1630.509 kb on - strand at 1630.513 kb on + strand at 1630.514 kb on - strand at 1630.533 kb on + strand at 1630.534 kb on - strand at 1630.538 kb on + strand at 1630.538 kb on + strand at 1630.539 kb on - strand at 1630.586 kb on + strand at 1630.586 kb on + strand at 1630.587 kb on - strand at 1630.587 kb on - strand at 1630.587 kb on - strand at 1630.587 kb on - strand at 1630.592 kb on + strand at 1630.593 kb on - strand at 1630.774 kb on + strand at 1630.775 kb on - strand at 1630.823 kb on + strand at 1630.823 kb on + strand at 1630.823 kb on + strand at 1630.823 kb on + strand at 1630.823 kb on + strand at 1630.824 kb on - strand, within AO356_07355 at 1630.824 kb on - strand, within AO356_07355 at 1630.824 kb on - strand, within AO356_07355 at 1630.824 kb on - strand, within AO356_07355 at 1631.119 kb on + strand, within AO356_07355 at 1631.149 kb on + strand, within AO356_07355 at 1631.320 kb on + strand, within AO356_07355 at 1631.321 kb on - strand, within AO356_07355 at 1631.362 kb on + strand, within AO356_07355 at 1631.363 kb on - strand, within AO356_07355 at 1631.363 kb on - strand, within AO356_07355 at 1631.363 kb on - strand, within AO356_07355 at 1631.363 kb on - strand, within AO356_07355 at 1631.677 kb on + strand, within AO356_07360 at 1631.677 kb on + strand, within AO356_07360 at 1631.677 kb on + strand, within AO356_07360 at 1631.677 kb on + strand, within AO356_07360 at 1631.677 kb on + strand, within AO356_07360 at 1631.678 kb on - strand, within AO356_07360 at 1631.678 kb on - strand, within AO356_07360 at 1631.678 kb on - strand, within AO356_07360 at 1631.742 kb on + strand, within AO356_07360 at 1631.742 kb on + strand, within AO356_07360 at 1631.742 kb on + strand, within AO356_07360 at 1631.742 kb on + strand, within AO356_07360 at 1631.743 kb on - strand, within AO356_07360 at 1631.743 kb on - strand, within AO356_07360 at 1631.743 kb on - strand, within AO356_07360 at 1631.943 kb on + strand, within AO356_07360 at 1631.944 kb on - strand, within AO356_07360 at 1632.134 kb on - strand at 1632.134 kb on - strand at 1632.134 kb on - strand at 1632.170 kb on + strand at 1632.170 kb on + strand at 1632.170 kb on + strand at 1632.170 kb on + strand at 1632.171 kb on - strand at 1632.171 kb on - strand at 1632.364 kb on + strand at 1632.364 kb on + strand at 1632.364 kb on + strand at 1632.365 kb on - strand at 1632.410 kb on + strand at 1632.411 kb on - strand at 1632.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 672 hrs remove 1,630,333 + -0.1 1,630,334 - -0.8 1,630,438 + +0.6 1,630,439 - -0.1 1,630,447 + +1.8 1,630,447 + +0.2 1,630,447 + +0.2 1,630,448 - +2.6 1,630,448 - +0.0 1,630,448 - +0.2 1,630,448 - +1.1 1,630,448 - +0.5 1,630,454 - +0.2 1,630,454 - +0.8 1,630,454 - +0.3 1,630,454 - -0.2 1,630,487 + -0.9 1,630,506 + -0.2 1,630,506 + +0.9 1,630,506 + +1.0 1,630,507 - +0.5 1,630,507 - -0.1 1,630,507 - +0.5 1,630,507 - -0.1 1,630,507 - +0.5 1,630,509 - +0.8 1,630,513 + -0.4 1,630,514 - +0.5 1,630,533 + +0.2 1,630,534 - +0.2 1,630,538 + +0.0 1,630,538 + +1.0 1,630,539 - +0.7 1,630,586 + -0.6 1,630,586 + -0.3 1,630,587 - +0.2 1,630,587 - +0.3 1,630,587 - +0.4 1,630,587 - -0.4 1,630,592 + -0.2 1,630,593 - +0.8 1,630,774 + +0.8 1,630,775 - -0.6 1,630,823 + -1.2 1,630,823 + -0.8 1,630,823 + -0.6 1,630,823 + +0.1 1,630,823 + -0.8 1,630,824 - AO356_07355 0.10 +0.8 1,630,824 - AO356_07355 0.10 -0.5 1,630,824 - AO356_07355 0.10 -0.5 1,630,824 - AO356_07355 0.10 +0.1 1,631,119 + AO356_07355 0.45 -1.0 1,631,149 + AO356_07355 0.49 -1.3 1,631,320 + AO356_07355 0.69 +0.1 1,631,321 - AO356_07355 0.69 -0.6 1,631,362 + AO356_07355 0.74 -1.3 1,631,363 - AO356_07355 0.74 +0.2 1,631,363 - AO356_07355 0.74 -0.6 1,631,363 - AO356_07355 0.74 -0.2 1,631,363 - AO356_07355 0.74 -0.3 1,631,677 + AO356_07360 0.19 -0.9 1,631,677 + AO356_07360 0.19 -2.5 1,631,677 + AO356_07360 0.19 -1.0 1,631,677 + AO356_07360 0.19 -2.1 1,631,677 + AO356_07360 0.19 -0.2 1,631,678 - AO356_07360 0.19 +0.7 1,631,678 - AO356_07360 0.19 -0.7 1,631,678 - AO356_07360 0.19 -0.4 1,631,742 + AO356_07360 0.30 -0.6 1,631,742 + AO356_07360 0.30 -1.1 1,631,742 + AO356_07360 0.30 -2.3 1,631,742 + AO356_07360 0.30 -1.5 1,631,743 - AO356_07360 0.30 +0.2 1,631,743 - AO356_07360 0.30 -0.6 1,631,743 - AO356_07360 0.30 -0.6 1,631,943 + AO356_07360 0.66 -1.2 1,631,944 - AO356_07360 0.66 -1.2 1,632,134 - +1.2 1,632,134 - +1.7 1,632,134 - +0.1 1,632,170 + -1.4 1,632,170 + -0.4 1,632,170 + +1.0 1,632,170 + +0.4 1,632,171 - +1.4 1,632,171 - +1.1 1,632,364 + +1.1 1,632,364 + -1.1 1,632,364 + +0.3 1,632,365 - +0.6 1,632,410 + +1.5 1,632,411 - +0.8 1,632,411 - +1.2
Or see this region's nucleotide sequence