Experiment: 4C survival; 672 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_05780 and AO356_05785 are separated by 9 nucleotides AO356_05785 and AO356_05790 overlap by 8 nucleotides AO356_05790 and AO356_05795 overlap by 1 nucleotides AO356_05795 and AO356_05800 are separated by 128 nucleotides AO356_05800 and AO356_05805 are separated by 152 nucleotides
AO356_05780: AO356_05780 - phage tail protein, at 1,284,794 to 1,285,810
_05780
AO356_05785: AO356_05785 - phage tail protein, at 1,285,820 to 1,286,032
_05785
AO356_05790: AO356_05790 - hypothetical protein, at 1,286,025 to 1,286,408
_05790
AO356_05795: AO356_05795 - phage tail protein, at 1,286,408 to 1,288,588
_05795
AO356_05800: AO356_05800 - hypothetical protein, at 1,288,717 to 1,289,292
_05800
AO356_05805: AO356_05805 - phage tail protein, at 1,289,445 to 1,289,951
_05805
Position (kb) 1286
1287
1288
1289 Strain fitness (log2 ratio) -1
0
1 at 1285.776 kb on + strand at 1285.957 kb on + strand, within AO356_05785 at 1285.957 kb on + strand, within AO356_05785 at 1285.983 kb on + strand, within AO356_05785 at 1286.027 kb on - strand at 1286.228 kb on - strand, within AO356_05790 at 1286.228 kb on - strand, within AO356_05790 at 1286.337 kb on + strand, within AO356_05790 at 1286.350 kb on + strand, within AO356_05790 at 1286.413 kb on + strand at 1286.413 kb on + strand at 1286.414 kb on - strand at 1286.414 kb on - strand at 1286.414 kb on - strand at 1286.550 kb on + strand at 1286.550 kb on + strand at 1286.550 kb on + strand at 1286.550 kb on + strand at 1286.550 kb on + strand at 1286.551 kb on - strand at 1286.925 kb on - strand, within AO356_05795 at 1287.037 kb on + strand, within AO356_05795 at 1287.037 kb on + strand, within AO356_05795 at 1287.298 kb on + strand, within AO356_05795 at 1287.893 kb on + strand, within AO356_05795 at 1288.523 kb on - strand at 1288.523 kb on - strand at 1288.572 kb on + strand at 1288.572 kb on + strand at 1288.572 kb on + strand at 1288.573 kb on - strand at 1288.573 kb on - strand at 1288.573 kb on - strand at 1288.577 kb on - strand at 1288.577 kb on - strand at 1288.577 kb on - strand at 1288.577 kb on - strand at 1288.685 kb on + strand at 1288.686 kb on - strand at 1288.692 kb on + strand at 1288.979 kb on - strand, within AO356_05800 at 1289.057 kb on + strand, within AO356_05800 at 1289.057 kb on + strand, within AO356_05800 at 1289.058 kb on - strand, within AO356_05800 at 1289.058 kb on - strand, within AO356_05800 at 1289.058 kb on - strand, within AO356_05800 at 1289.076 kb on - strand, within AO356_05800 at 1289.202 kb on - strand, within AO356_05800 at 1289.309 kb on + strand at 1289.310 kb on - strand at 1289.446 kb on + strand at 1289.560 kb on + strand, within AO356_05805 at 1289.560 kb on + strand, within AO356_05805 at 1289.560 kb on + strand, within AO356_05805 at 1289.561 kb on - strand, within AO356_05805
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 672 hrs remove 1,285,776 + -0.4 1,285,957 + AO356_05785 0.64 +0.5 1,285,957 + AO356_05785 0.64 -0.0 1,285,983 + AO356_05785 0.77 +0.3 1,286,027 - +0.1 1,286,228 - AO356_05790 0.53 +0.2 1,286,228 - AO356_05790 0.53 -0.5 1,286,337 + AO356_05790 0.81 -0.1 1,286,350 + AO356_05790 0.85 -0.8 1,286,413 + -0.2 1,286,413 + +0.8 1,286,414 - +0.3 1,286,414 - -0.2 1,286,414 - -0.1 1,286,550 + +0.0 1,286,550 + +0.3 1,286,550 + -0.4 1,286,550 + +0.4 1,286,550 + -0.7 1,286,551 - -0.0 1,286,925 - AO356_05795 0.24 +1.0 1,287,037 + AO356_05795 0.29 +0.3 1,287,037 + AO356_05795 0.29 +0.7 1,287,298 + AO356_05795 0.41 +0.2 1,287,893 + AO356_05795 0.68 +0.5 1,288,523 - -0.2 1,288,523 - +0.0 1,288,572 + -0.1 1,288,572 + -0.6 1,288,572 + -0.2 1,288,573 - +0.3 1,288,573 - +0.0 1,288,573 - +0.7 1,288,577 - +0.0 1,288,577 - +0.2 1,288,577 - -0.5 1,288,577 - +1.2 1,288,685 + +0.3 1,288,686 - +0.9 1,288,692 + +0.6 1,288,979 - AO356_05800 0.45 -0.8 1,289,057 + AO356_05800 0.59 +0.5 1,289,057 + AO356_05800 0.59 -0.6 1,289,058 - AO356_05800 0.59 +1.0 1,289,058 - AO356_05800 0.59 +0.1 1,289,058 - AO356_05800 0.59 -0.4 1,289,076 - AO356_05800 0.62 -0.4 1,289,202 - AO356_05800 0.84 -0.5 1,289,309 + -0.6 1,289,310 - -1.5 1,289,446 + +0.2 1,289,560 + AO356_05805 0.23 -0.1 1,289,560 + AO356_05805 0.23 +0.7 1,289,560 + AO356_05805 0.23 +1.2 1,289,561 - AO356_05805 0.23 +0.8
Or see this region's nucleotide sequence