Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04355

Experiment: 4C survival; 672 hrs

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_04345 and AO356_04350 are separated by 12 nucleotidesAO356_04350 and AO356_04355 are separated by 32 nucleotidesAO356_04355 and AO356_04360 are separated by 135 nucleotides AO356_04345: AO356_04345 - hypothetical protein, at 989,255 to 989,797 _04345 AO356_04350: AO356_04350 - glutamine amidotransferase, at 989,810 to 990,586 _04350 AO356_04355: AO356_04355 - MFS transporter, at 990,619 to 991,116 _04355 AO356_04360: AO356_04360 - peptidase S9, at 991,252 to 993,306 _04360 Position (kb) 990 991 992Strain fitness (log2 ratio) -2 -1 0 1 2 3at 989.716 kb on - strand, within AO356_04345at 989.780 kb on + strandat 989.780 kb on + strandat 989.781 kb on - strandat 989.781 kb on - strandat 989.784 kb on + strandat 989.784 kb on + strandat 989.784 kb on + strandat 989.784 kb on + strandat 989.784 kb on + strandat 989.785 kb on - strandat 989.797 kb on + strandat 989.797 kb on + strandat 989.797 kb on + strandat 989.797 kb on + strandat 989.797 kb on + strandat 989.798 kb on - strandat 989.798 kb on - strandat 989.798 kb on - strandat 989.811 kb on + strandat 990.039 kb on + strand, within AO356_04350at 990.138 kb on - strand, within AO356_04350at 990.225 kb on + strand, within AO356_04350at 990.355 kb on + strand, within AO356_04350at 990.366 kb on - strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.465 kb on + strand, within AO356_04350at 990.466 kb on - strand, within AO356_04350at 990.466 kb on - strand, within AO356_04350at 990.466 kb on - strand, within AO356_04350at 990.466 kb on - strand, within AO356_04350at 990.466 kb on - strand, within AO356_04350at 990.575 kb on + strandat 990.576 kb on - strandat 990.620 kb on + strandat 990.620 kb on + strandat 990.620 kb on + strandat 990.621 kb on - strandat 990.621 kb on - strandat 990.819 kb on - strand, within AO356_04355at 990.843 kb on - strand, within AO356_04355at 990.843 kb on - strand, within AO356_04355at 990.843 kb on - strand, within AO356_04355at 991.070 kb on + strandat 991.091 kb on + strandat 991.092 kb on - strandat 991.140 kb on + strandat 991.140 kb on + strandat 991.140 kb on + strandat 991.140 kb on + strandat 991.140 kb on + strandat 991.140 kb on + strandat 991.141 kb on - strandat 991.141 kb on - strandat 991.141 kb on - strandat 991.141 kb on - strandat 991.142 kb on + strandat 991.142 kb on + strandat 991.142 kb on + strandat 991.142 kb on + strandat 991.142 kb on + strandat 991.143 kb on - strandat 991.143 kb on - strandat 991.143 kb on - strandat 991.143 kb on - strandat 991.143 kb on - strandat 991.143 kb on - strandat 991.143 kb on - strandat 991.143 kb on - strandat 991.143 kb on - strandat 991.143 kb on - strandat 991.143 kb on - strandat 991.231 kb on + strandat 991.231 kb on + strandat 991.232 kb on - strandat 991.232 kb on - strandat 991.232 kb on - strandat 991.260 kb on - strandat 991.358 kb on - strandat 991.358 kb on - strandat 991.358 kb on - strandat 991.358 kb on - strandat 991.378 kb on + strandat 991.378 kb on + strandat 991.378 kb on + strandat 991.379 kb on - strandat 991.379 kb on - strandat 991.379 kb on - strandat 991.489 kb on + strand, within AO356_04360at 991.490 kb on - strand, within AO356_04360at 991.495 kb on + strand, within AO356_04360at 991.495 kb on + strand, within AO356_04360at 991.495 kb on + strand, within AO356_04360at 991.495 kb on + strand, within AO356_04360at 991.495 kb on + strand, within AO356_04360at 991.496 kb on - strand, within AO356_04360at 991.498 kb on + strand, within AO356_04360at 991.498 kb on + strand, within AO356_04360at 991.498 kb on + strand, within AO356_04360at 991.499 kb on - strand, within AO356_04360at 991.499 kb on - strand, within AO356_04360at 991.499 kb on - strand, within AO356_04360at 991.499 kb on - strand, within AO356_04360at 991.499 kb on - strand, within AO356_04360at 991.681 kb on + strand, within AO356_04360at 991.711 kb on + strand, within AO356_04360at 991.711 kb on + strand, within AO356_04360at 991.711 kb on + strand, within AO356_04360at 991.711 kb on + strand, within AO356_04360at 991.711 kb on + strand, within AO356_04360at 991.711 kb on + strand, within AO356_04360at 991.711 kb on + strand, within AO356_04360at 991.711 kb on + strand, within AO356_04360at 991.711 kb on + strand, within AO356_04360at 991.712 kb on - strand, within AO356_04360at 991.712 kb on - strand, within AO356_04360at 991.712 kb on - strand, within AO356_04360at 991.712 kb on - strand, within AO356_04360at 991.712 kb on - strand, within AO356_04360at 991.712 kb on - strand, within AO356_04360at 991.712 kb on - strand, within AO356_04360at 991.712 kb on - strand, within AO356_04360at 991.712 kb on - strand, within AO356_04360at 992.063 kb on - strand, within AO356_04360

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 672 hrs
remove
989,716 - AO356_04345 0.85 -1.1
989,780 + +0.3
989,780 + -1.2
989,781 - +3.0
989,781 - -2.1
989,784 + -0.7
989,784 + -0.1
989,784 + -1.4
989,784 + +0.0
989,784 + -0.7
989,785 - -0.3
989,797 + -2.0
989,797 + -0.7
989,797 + +1.2
989,797 + -1.3
989,797 + -0.9
989,798 - -0.9
989,798 - -1.7
989,798 - -0.3
989,811 + -2.5
990,039 + AO356_04350 0.29 -1.1
990,138 - AO356_04350 0.42 -0.8
990,225 + AO356_04350 0.53 -0.9
990,355 + AO356_04350 0.70 -1.0
990,366 - AO356_04350 0.72 -1.1
990,465 + AO356_04350 0.84 -0.7
990,465 + AO356_04350 0.84 +0.4
990,465 + AO356_04350 0.84 -1.4
990,465 + AO356_04350 0.84 -0.2
990,465 + AO356_04350 0.84 -0.7
990,465 + AO356_04350 0.84 -0.1
990,465 + AO356_04350 0.84 -0.9
990,465 + AO356_04350 0.84 -1.2
990,465 + AO356_04350 0.84 -0.6
990,466 - AO356_04350 0.84 +0.2
990,466 - AO356_04350 0.84 +0.1
990,466 - AO356_04350 0.84 +0.8
990,466 - AO356_04350 0.84 +0.2
990,466 - AO356_04350 0.84 -1.0
990,575 + -0.4
990,576 - +0.9
990,620 + +1.4
990,620 + +0.8
990,620 + -1.1
990,621 - +0.7
990,621 - +0.5
990,819 - AO356_04355 0.40 -0.3
990,843 - AO356_04355 0.45 -2.0
990,843 - AO356_04355 0.45 -2.0
990,843 - AO356_04355 0.45 -0.2
991,070 + -0.6
991,091 + -0.4
991,092 - -0.9
991,140 + +0.5
991,140 + -0.8
991,140 + -0.8
991,140 + -0.7
991,140 + -1.5
991,140 + +1.2
991,141 - +0.2
991,141 - +0.5
991,141 - +0.3
991,141 - +0.3
991,142 + -1.4
991,142 + -0.9
991,142 + -0.3
991,142 + -0.7
991,142 + -0.9
991,143 - +0.0
991,143 - +2.2
991,143 - +0.1
991,143 - +0.2
991,143 - +0.0
991,143 - +0.0
991,143 - +0.1
991,143 - +0.1
991,143 - +0.2
991,143 - -0.2
991,143 - +1.2
991,231 + +0.6
991,231 + -0.2
991,232 - -0.5
991,232 - -0.5
991,232 - -0.2
991,260 - +0.7
991,358 - -0.5
991,358 - +0.6
991,358 - -0.2
991,358 - -0.3
991,378 + +0.5
991,378 + +0.4
991,378 + -0.8
991,379 - -0.2
991,379 - +0.1
991,379 - +0.3
991,489 + AO356_04360 0.12 +0.0
991,490 - AO356_04360 0.12 -0.1
991,495 + AO356_04360 0.12 -0.1
991,495 + AO356_04360 0.12 -0.4
991,495 + AO356_04360 0.12 +0.1
991,495 + AO356_04360 0.12 -0.1
991,495 + AO356_04360 0.12 +0.1
991,496 - AO356_04360 0.12 +0.0
991,498 + AO356_04360 0.12 -0.1
991,498 + AO356_04360 0.12 +0.4
991,498 + AO356_04360 0.12 +0.5
991,499 - AO356_04360 0.12 +0.1
991,499 - AO356_04360 0.12 -0.5
991,499 - AO356_04360 0.12 -0.1
991,499 - AO356_04360 0.12 +0.4
991,499 - AO356_04360 0.12 +0.5
991,681 + AO356_04360 0.21 -0.1
991,711 + AO356_04360 0.22 +0.0
991,711 + AO356_04360 0.22 +0.2
991,711 + AO356_04360 0.22 -0.1
991,711 + AO356_04360 0.22 -0.6
991,711 + AO356_04360 0.22 -0.5
991,711 + AO356_04360 0.22 -0.2
991,711 + AO356_04360 0.22 -1.8
991,711 + AO356_04360 0.22 -2.1
991,711 + AO356_04360 0.22 -0.3
991,712 - AO356_04360 0.22 -0.6
991,712 - AO356_04360 0.22 +0.0
991,712 - AO356_04360 0.22 +2.0
991,712 - AO356_04360 0.22 +0.4
991,712 - AO356_04360 0.22 +0.6
991,712 - AO356_04360 0.22 -0.9
991,712 - AO356_04360 0.22 +0.2
991,712 - AO356_04360 0.22 -1.0
991,712 - AO356_04360 0.22 +0.1
992,063 - AO356_04360 0.39 +0.3

Or see this region's nucleotide sequence