Experiment: Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20925 and IAI47_20930 are separated by 41 nucleotides IAI47_20930 and IAI47_20935 are separated by 325 nucleotides
IAI47_20925: IAI47_20925 - sugar ABC transporter permease, at 432,023 to 433,330
_20925
IAI47_20930: IAI47_20930 - extracellular solute-binding protein, at 433,372 to 434,592
_20930
IAI47_20935: IAI47_20935 - ABC transporter ATP-binding protein, at 434,918 to 436,036
_20935
Position (kb) 433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 432.491 kb on - strand, within IAI47_20925 at 432.604 kb on + strand, within IAI47_20925 at 432.629 kb on - strand, within IAI47_20925 at 432.763 kb on + strand, within IAI47_20925 at 432.763 kb on + strand, within IAI47_20925 at 432.763 kb on + strand, within IAI47_20925 at 432.763 kb on + strand, within IAI47_20925 at 432.764 kb on - strand, within IAI47_20925 at 432.766 kb on + strand, within IAI47_20925 at 432.766 kb on + strand, within IAI47_20925 at 432.826 kb on - strand, within IAI47_20925 at 432.826 kb on - strand, within IAI47_20925 at 432.834 kb on + strand, within IAI47_20925 at 432.834 kb on + strand, within IAI47_20925 at 432.834 kb on + strand, within IAI47_20925 at 432.834 kb on + strand, within IAI47_20925 at 432.834 kb on + strand, within IAI47_20925 at 432.835 kb on - strand, within IAI47_20925 at 432.835 kb on - strand, within IAI47_20925 at 432.835 kb on - strand, within IAI47_20925 at 432.835 kb on - strand, within IAI47_20925 at 432.835 kb on - strand, within IAI47_20925 at 432.835 kb on - strand, within IAI47_20925 at 432.838 kb on + strand, within IAI47_20925 at 432.839 kb on - strand, within IAI47_20925 at 432.839 kb on - strand, within IAI47_20925 at 432.839 kb on - strand, within IAI47_20925 at 432.899 kb on - strand, within IAI47_20925 at 432.921 kb on + strand, within IAI47_20925 at 432.944 kb on + strand, within IAI47_20925 at 432.945 kb on - strand, within IAI47_20925 at 432.945 kb on - strand, within IAI47_20925 at 432.951 kb on + strand, within IAI47_20925 at 432.951 kb on + strand, within IAI47_20925 at 432.952 kb on - strand, within IAI47_20925 at 432.971 kb on - strand, within IAI47_20925 at 432.994 kb on + strand, within IAI47_20925 at 432.994 kb on + strand, within IAI47_20925 at 432.994 kb on + strand, within IAI47_20925 at 432.995 kb on - strand, within IAI47_20925 at 433.069 kb on + strand, within IAI47_20925 at 433.069 kb on + strand, within IAI47_20925 at 433.069 kb on + strand, within IAI47_20925 at 433.070 kb on - strand, within IAI47_20925 at 433.126 kb on + strand, within IAI47_20925 at 433.126 kb on + strand, within IAI47_20925 at 433.126 kb on + strand, within IAI47_20925 at 433.126 kb on + strand, within IAI47_20925 at 433.126 kb on + strand, within IAI47_20925 at 433.129 kb on - strand, within IAI47_20925 at 433.129 kb on - strand, within IAI47_20925 at 433.174 kb on + strand, within IAI47_20925 at 433.227 kb on + strand at 433.228 kb on - strand at 433.228 kb on - strand at 433.322 kb on + strand at 433.322 kb on + strand at 433.322 kb on + strand at 433.323 kb on - strand at 433.323 kb on - strand at 433.324 kb on + strand at 433.324 kb on + strand at 433.324 kb on + strand at 433.324 kb on + strand at 433.325 kb on - strand at 433.325 kb on - strand at 433.325 kb on - strand at 433.325 kb on - strand at 433.325 kb on - strand at 433.325 kb on - strand at 433.325 kb on - strand at 433.325 kb on - strand at 433.325 kb on - strand at 433.349 kb on + strand at 433.355 kb on + strand at 433.355 kb on + strand at 433.373 kb on + strand at 433.373 kb on + strand at 433.516 kb on + strand, within IAI47_20930 at 433.517 kb on - strand, within IAI47_20930 at 433.652 kb on + strand, within IAI47_20930 at 433.652 kb on + strand, within IAI47_20930 at 433.653 kb on - strand, within IAI47_20930 at 433.666 kb on - strand, within IAI47_20930 at 433.668 kb on + strand, within IAI47_20930 at 433.668 kb on + strand, within IAI47_20930 at 433.669 kb on - strand, within IAI47_20930 at 433.669 kb on - strand, within IAI47_20930 at 433.669 kb on - strand, within IAI47_20930 at 433.669 kb on - strand, within IAI47_20930 at 433.704 kb on + strand, within IAI47_20930 at 433.705 kb on - strand, within IAI47_20930 at 433.725 kb on - strand, within IAI47_20930 at 433.725 kb on - strand, within IAI47_20930 at 433.732 kb on + strand, within IAI47_20930 at 433.732 kb on + strand, within IAI47_20930 at 433.732 kb on + strand, within IAI47_20930 at 433.732 kb on + strand, within IAI47_20930 at 433.732 kb on + strand, within IAI47_20930 at 433.771 kb on + strand, within IAI47_20930 at 433.772 kb on - strand, within IAI47_20930 at 433.793 kb on + strand, within IAI47_20930 at 433.793 kb on + strand, within IAI47_20930 at 433.793 kb on + strand, within IAI47_20930 at 433.794 kb on - strand, within IAI47_20930 at 433.815 kb on - strand, within IAI47_20930 at 433.949 kb on + strand, within IAI47_20930 at 433.949 kb on + strand, within IAI47_20930 at 433.949 kb on + strand, within IAI47_20930 at 433.949 kb on + strand, within IAI47_20930 at 433.949 kb on + strand, within IAI47_20930 at 433.950 kb on - strand, within IAI47_20930 at 433.950 kb on - strand, within IAI47_20930 at 433.950 kb on - strand, within IAI47_20930 at 433.950 kb on - strand, within IAI47_20930 at 433.990 kb on - strand, within IAI47_20930 at 433.990 kb on - strand, within IAI47_20930 at 434.033 kb on + strand, within IAI47_20930 at 434.033 kb on + strand, within IAI47_20930 at 434.033 kb on + strand, within IAI47_20930 at 434.033 kb on + strand, within IAI47_20930 at 434.033 kb on + strand, within IAI47_20930 at 434.033 kb on + strand, within IAI47_20930 at 434.033 kb on + strand, within IAI47_20930 at 434.033 kb on + strand, within IAI47_20930 at 434.034 kb on - strand, within IAI47_20930 at 434.034 kb on - strand, within IAI47_20930 at 434.034 kb on - strand, within IAI47_20930 at 434.034 kb on - strand, within IAI47_20930 at 434.034 kb on - strand, within IAI47_20930 at 434.034 kb on - strand, within IAI47_20930 at 434.034 kb on - strand, within IAI47_20930 at 434.034 kb on - strand, within IAI47_20930 at 434.066 kb on + strand, within IAI47_20930 at 434.066 kb on + strand, within IAI47_20930 at 434.069 kb on + strand, within IAI47_20930 at 434.069 kb on + strand, within IAI47_20930 at 434.069 kb on + strand, within IAI47_20930 at 434.069 kb on + strand, within IAI47_20930 at 434.099 kb on + strand, within IAI47_20930 at 434.138 kb on + strand, within IAI47_20930 at 434.183 kb on + strand, within IAI47_20930 at 434.222 kb on + strand, within IAI47_20930 at 434.222 kb on + strand, within IAI47_20930 at 434.222 kb on + strand, within IAI47_20930 at 434.223 kb on - strand, within IAI47_20930 at 434.223 kb on - strand, within IAI47_20930 at 434.223 kb on - strand, within IAI47_20930 at 434.223 kb on - strand, within IAI47_20930 at 434.223 kb on - strand, within IAI47_20930 at 434.223 kb on - strand, within IAI47_20930 at 434.223 kb on - strand, within IAI47_20930 at 434.223 kb on - strand, within IAI47_20930 at 434.223 kb on - strand, within IAI47_20930 at 434.242 kb on - strand, within IAI47_20930 at 434.267 kb on + strand, within IAI47_20930 at 434.267 kb on + strand, within IAI47_20930 at 434.268 kb on - strand, within IAI47_20930 at 434.496 kb on + strand at 434.497 kb on - strand at 434.497 kb on - strand at 434.497 kb on - strand at 434.497 kb on - strand at 434.514 kb on + strand at 434.514 kb on + strand at 434.514 kb on + strand at 434.515 kb on - strand at 434.515 kb on - strand at 434.515 kb on - strand at 434.515 kb on - strand at 434.544 kb on + strand at 434.544 kb on + strand at 434.544 kb on + strand at 434.544 kb on + strand at 434.571 kb on + strand at 434.571 kb on + strand at 434.777 kb on - strand at 434.777 kb on - strand at 434.797 kb on + strand at 434.797 kb on + strand at 434.797 kb on + strand at 434.797 kb on + strand at 434.797 kb on + strand at 434.797 kb on + strand at 434.797 kb on + strand at 434.823 kb on - strand at 434.823 kb on - strand at 434.873 kb on - strand at 434.915 kb on - strand at 434.915 kb on - strand at 434.915 kb on - strand at 434.915 kb on - strand at 434.915 kb on - strand at 434.915 kb on - strand at 434.926 kb on + strand at 434.927 kb on - strand at 434.992 kb on + strand at 434.992 kb on + strand at 435.040 kb on + strand, within IAI47_20935 at 435.203 kb on - strand, within IAI47_20935 at 435.223 kb on - strand, within IAI47_20935 at 435.305 kb on - strand, within IAI47_20935 at 435.310 kb on + strand, within IAI47_20935 at 435.311 kb on - strand, within IAI47_20935 at 435.367 kb on + strand, within IAI47_20935 at 435.382 kb on + strand, within IAI47_20935 at 435.382 kb on + strand, within IAI47_20935 at 435.383 kb on - strand, within IAI47_20935 at 435.383 kb on - strand, within IAI47_20935 at 435.430 kb on + strand, within IAI47_20935 at 435.448 kb on + strand, within IAI47_20935 at 435.448 kb on + strand, within IAI47_20935 at 435.448 kb on + strand, within IAI47_20935 at 435.448 kb on + strand, within IAI47_20935 at 435.448 kb on + strand, within IAI47_20935 at 435.449 kb on - strand, within IAI47_20935 at 435.449 kb on - strand, within IAI47_20935 at 435.449 kb on - strand, within IAI47_20935 at 435.482 kb on + strand, within IAI47_20935 at 435.482 kb on + strand, within IAI47_20935 at 435.482 kb on + strand, within IAI47_20935 at 435.482 kb on + strand, within IAI47_20935 at 435.482 kb on + strand, within IAI47_20935 at 435.482 kb on + strand, within IAI47_20935 at 435.483 kb on - strand, within IAI47_20935 at 435.483 kb on - strand, within IAI47_20935 at 435.483 kb on - strand, within IAI47_20935 at 435.542 kb on + strand, within IAI47_20935 at 435.543 kb on - strand, within IAI47_20935 at 435.581 kb on + strand, within IAI47_20935 at 435.582 kb on - strand, within IAI47_20935 at 435.582 kb on - strand, within IAI47_20935 at 435.584 kb on + strand, within IAI47_20935 at 435.584 kb on + strand, within IAI47_20935 at 435.585 kb on - strand, within IAI47_20935
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 432,491 - IAI47_20925 0.36 -0.1 432,604 + IAI47_20925 0.44 -0.6 432,629 - IAI47_20925 0.46 -0.6 432,763 + IAI47_20925 0.57 +0.7 432,763 + IAI47_20925 0.57 +0.4 432,763 + IAI47_20925 0.57 +0.5 432,763 + IAI47_20925 0.57 -1.1 432,764 - IAI47_20925 0.57 -0.6 432,766 + IAI47_20925 0.57 +0.3 432,766 + IAI47_20925 0.57 +0.4 432,826 - IAI47_20925 0.61 +0.9 432,826 - IAI47_20925 0.61 +1.4 432,834 + IAI47_20925 0.62 -0.6 432,834 + IAI47_20925 0.62 -1.6 432,834 + IAI47_20925 0.62 +0.3 432,834 + IAI47_20925 0.62 -1.4 432,834 + IAI47_20925 0.62 +0.3 432,835 - IAI47_20925 0.62 -1.1 432,835 - IAI47_20925 0.62 -2.1 432,835 - IAI47_20925 0.62 -0.1 432,835 - IAI47_20925 0.62 +0.4 432,835 - IAI47_20925 0.62 -0.3 432,835 - IAI47_20925 0.62 -1.4 432,838 + IAI47_20925 0.62 -0.7 432,839 - IAI47_20925 0.62 +1.3 432,839 - IAI47_20925 0.62 -0.6 432,839 - IAI47_20925 0.62 -0.1 432,899 - IAI47_20925 0.67 +0.7 432,921 + IAI47_20925 0.69 -0.9 432,944 + IAI47_20925 0.70 +0.4 432,945 - IAI47_20925 0.70 +2.3 432,945 - IAI47_20925 0.70 +0.3 432,951 + IAI47_20925 0.71 -0.1 432,951 + IAI47_20925 0.71 +0.3 432,952 - IAI47_20925 0.71 +0.0 432,971 - IAI47_20925 0.72 -0.9 432,994 + IAI47_20925 0.74 +2.3 432,994 + IAI47_20925 0.74 +1.5 432,994 + IAI47_20925 0.74 -1.5 432,995 - IAI47_20925 0.74 +0.3 433,069 + IAI47_20925 0.80 -2.0 433,069 + IAI47_20925 0.80 +0.5 433,069 + IAI47_20925 0.80 -0.4 433,070 - IAI47_20925 0.80 -0.4 433,126 + IAI47_20925 0.84 -2.0 433,126 + IAI47_20925 0.84 -1.7 433,126 + IAI47_20925 0.84 -1.1 433,126 + IAI47_20925 0.84 +0.4 433,126 + IAI47_20925 0.84 +0.3 433,129 - IAI47_20925 0.85 +0.5 433,129 - IAI47_20925 0.85 +0.8 433,174 + IAI47_20925 0.88 +1.7 433,227 + +0.6 433,228 - +0.3 433,228 - +0.4 433,322 + +0.3 433,322 + -0.5 433,322 + -1.9 433,323 - +0.9 433,323 - +0.5 433,324 + -0.9 433,324 + -0.6 433,324 + -1.7 433,324 + -0.9 433,325 - +0.1 433,325 - +0.8 433,325 - +1.3 433,325 - -0.9 433,325 - +0.1 433,325 - -0.1 433,325 - +1.9 433,325 - +0.1 433,325 - -0.2 433,349 + -1.3 433,355 + -1.1 433,355 + -1.2 433,373 + +0.3 433,373 + +1.3 433,516 + IAI47_20930 0.12 +2.3 433,517 - IAI47_20930 0.12 +1.1 433,652 + IAI47_20930 0.23 -0.8 433,652 + IAI47_20930 0.23 -0.3 433,653 - IAI47_20930 0.23 +1.0 433,666 - IAI47_20930 0.24 +0.1 433,668 + IAI47_20930 0.24 +1.7 433,668 + IAI47_20930 0.24 +0.5 433,669 - IAI47_20930 0.24 -0.9 433,669 - IAI47_20930 0.24 +1.0 433,669 - IAI47_20930 0.24 -0.5 433,669 - IAI47_20930 0.24 +0.9 433,704 + IAI47_20930 0.27 +0.9 433,705 - IAI47_20930 0.27 +0.0 433,725 - IAI47_20930 0.29 +0.3 433,725 - IAI47_20930 0.29 +0.3 433,732 + IAI47_20930 0.29 +0.1 433,732 + IAI47_20930 0.29 +1.8 433,732 + IAI47_20930 0.29 +1.0 433,732 + IAI47_20930 0.29 -1.1 433,732 + IAI47_20930 0.29 +0.3 433,771 + IAI47_20930 0.33 +2.7 433,772 - IAI47_20930 0.33 +0.2 433,793 + IAI47_20930 0.34 -0.4 433,793 + IAI47_20930 0.34 +1.8 433,793 + IAI47_20930 0.34 +1.4 433,794 - IAI47_20930 0.35 -0.4 433,815 - IAI47_20930 0.36 -1.1 433,949 + IAI47_20930 0.47 +0.7 433,949 + IAI47_20930 0.47 +0.3 433,949 + IAI47_20930 0.47 +0.1 433,949 + IAI47_20930 0.47 -1.1 433,949 + IAI47_20930 0.47 +0.4 433,950 - IAI47_20930 0.47 -0.4 433,950 - IAI47_20930 0.47 +0.9 433,950 - IAI47_20930 0.47 +2.0 433,950 - IAI47_20930 0.47 -0.6 433,990 - IAI47_20930 0.51 +0.3 433,990 - IAI47_20930 0.51 +2.9 434,033 + IAI47_20930 0.54 +2.3 434,033 + IAI47_20930 0.54 -3.4 434,033 + IAI47_20930 0.54 +0.3 434,033 + IAI47_20930 0.54 +1.3 434,033 + IAI47_20930 0.54 -0.6 434,033 + IAI47_20930 0.54 -0.4 434,033 + IAI47_20930 0.54 +0.9 434,033 + IAI47_20930 0.54 -0.7 434,034 - IAI47_20930 0.54 -0.2 434,034 - IAI47_20930 0.54 +0.5 434,034 - IAI47_20930 0.54 +0.7 434,034 - IAI47_20930 0.54 +0.5 434,034 - IAI47_20930 0.54 +2.7 434,034 - IAI47_20930 0.54 -0.1 434,034 - IAI47_20930 0.54 +0.3 434,034 - IAI47_20930 0.54 +0.7 434,066 + IAI47_20930 0.57 +0.0 434,066 + IAI47_20930 0.57 -0.4 434,069 + IAI47_20930 0.57 +0.3 434,069 + IAI47_20930 0.57 -0.6 434,069 + IAI47_20930 0.57 -0.3 434,069 + IAI47_20930 0.57 -0.6 434,099 + IAI47_20930 0.60 +1.3 434,138 + IAI47_20930 0.63 +2.8 434,183 + IAI47_20930 0.66 -1.7 434,222 + IAI47_20930 0.70 +0.3 434,222 + IAI47_20930 0.70 +0.3 434,222 + IAI47_20930 0.70 -0.3 434,223 - IAI47_20930 0.70 +0.6 434,223 - IAI47_20930 0.70 +0.4 434,223 - IAI47_20930 0.70 +1.1 434,223 - IAI47_20930 0.70 -0.9 434,223 - IAI47_20930 0.70 +1.2 434,223 - IAI47_20930 0.70 +0.3 434,223 - IAI47_20930 0.70 -1.7 434,223 - IAI47_20930 0.70 +0.7 434,223 - IAI47_20930 0.70 +1.0 434,242 - IAI47_20930 0.71 +0.0 434,267 + IAI47_20930 0.73 -1.7 434,267 + IAI47_20930 0.73 -0.3 434,268 - IAI47_20930 0.73 +0.7 434,496 + +0.8 434,497 - +2.1 434,497 - -1.2 434,497 - +0.3 434,497 - +1.3 434,514 + +0.8 434,514 + +0.6 434,514 + +0.9 434,515 - -0.7 434,515 - -0.9 434,515 - -0.9 434,515 - +1.7 434,544 + -0.3 434,544 + +0.1 434,544 + -0.8 434,544 + +0.7 434,571 + +0.3 434,571 + +1.9 434,777 - +0.7 434,777 - +0.4 434,797 + +0.5 434,797 + +0.9 434,797 + +1.0 434,797 + -0.9 434,797 + +1.7 434,797 + -1.5 434,797 + +0.3 434,823 - +2.1 434,823 - -0.1 434,873 - +1.7 434,915 - +2.0 434,915 - -1.1 434,915 - +0.1 434,915 - +2.3 434,915 - +0.4 434,915 - -1.3 434,926 + +1.0 434,927 - -0.7 434,992 + +1.8 434,992 + -0.2 435,040 + IAI47_20935 0.11 +0.3 435,203 - IAI47_20935 0.25 -0.1 435,223 - IAI47_20935 0.27 +0.3 435,305 - IAI47_20935 0.35 +0.7 435,310 + IAI47_20935 0.35 +0.7 435,311 - IAI47_20935 0.35 -0.1 435,367 + IAI47_20935 0.40 +0.6 435,382 + IAI47_20935 0.41 -0.6 435,382 + IAI47_20935 0.41 +0.8 435,383 - IAI47_20935 0.42 +0.3 435,383 - IAI47_20935 0.42 +0.9 435,430 + IAI47_20935 0.46 -0.2 435,448 + IAI47_20935 0.47 +1.7 435,448 + IAI47_20935 0.47 -0.7 435,448 + IAI47_20935 0.47 +1.1 435,448 + IAI47_20935 0.47 +1.8 435,448 + IAI47_20935 0.47 +0.8 435,449 - IAI47_20935 0.47 +1.5 435,449 - IAI47_20935 0.47 +0.8 435,449 - IAI47_20935 0.47 -0.1 435,482 + IAI47_20935 0.50 +1.7 435,482 + IAI47_20935 0.50 -1.1 435,482 + IAI47_20935 0.50 +0.3 435,482 + IAI47_20935 0.50 +0.5 435,482 + IAI47_20935 0.50 +0.3 435,482 + IAI47_20935 0.50 -0.3 435,483 - IAI47_20935 0.50 -1.7 435,483 - IAI47_20935 0.50 -0.7 435,483 - IAI47_20935 0.50 -0.9 435,542 + IAI47_20935 0.56 -0.1 435,543 - IAI47_20935 0.56 +0.4 435,581 + IAI47_20935 0.59 -0.1 435,582 - IAI47_20935 0.59 -1.1 435,582 - IAI47_20935 0.59 +0.1 435,584 + IAI47_20935 0.60 +0.3 435,584 + IAI47_20935 0.60 +1.9 435,585 - IAI47_20935 0.60 -2.4
Or see this region's nucleotide sequence