Strain Fitness in Pantoea sp. MT58 around IAI47_19930

Experiment: Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_19925 and IAI47_19930 are separated by 35 nucleotidesIAI47_19930 and IAI47_19935 are separated by 72 nucleotides IAI47_19925: IAI47_19925 - TcfC E-set like domain-containing protein, at 210,826 to 213,279 _19925 IAI47_19930: IAI47_19930 - adhesin, at 213,315 to 213,848 _19930 IAI47_19935: IAI47_19935 - hypothetical protein, at 213,921 to 214,664 _19935 Position (kb) 213 214Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 212.334 kb on + strand, within IAI47_19925at 212.334 kb on + strand, within IAI47_19925at 212.335 kb on - strand, within IAI47_19925at 212.342 kb on - strand, within IAI47_19925at 212.343 kb on + strand, within IAI47_19925at 212.343 kb on + strand, within IAI47_19925at 212.343 kb on + strand, within IAI47_19925at 212.343 kb on + strand, within IAI47_19925at 212.343 kb on + strand, within IAI47_19925at 212.344 kb on - strand, within IAI47_19925at 212.344 kb on - strand, within IAI47_19925at 212.348 kb on + strand, within IAI47_19925at 212.348 kb on + strand, within IAI47_19925at 212.348 kb on + strand, within IAI47_19925at 212.349 kb on - strand, within IAI47_19925at 212.349 kb on - strand, within IAI47_19925at 212.399 kb on - strand, within IAI47_19925at 212.399 kb on - strand, within IAI47_19925at 212.409 kb on + strand, within IAI47_19925at 212.454 kb on + strand, within IAI47_19925at 212.454 kb on + strand, within IAI47_19925at 212.455 kb on - strand, within IAI47_19925at 212.455 kb on - strand, within IAI47_19925at 212.455 kb on - strand, within IAI47_19925at 212.468 kb on + strand, within IAI47_19925at 212.468 kb on + strand, within IAI47_19925at 212.469 kb on - strand, within IAI47_19925at 212.469 kb on - strand, within IAI47_19925at 212.469 kb on - strand, within IAI47_19925at 212.469 kb on - strand, within IAI47_19925at 212.469 kb on - strand, within IAI47_19925at 212.497 kb on - strand, within IAI47_19925at 212.512 kb on - strand, within IAI47_19925at 212.512 kb on - strand, within IAI47_19925at 212.512 kb on - strand, within IAI47_19925at 212.512 kb on - strand, within IAI47_19925at 212.539 kb on + strand, within IAI47_19925at 212.540 kb on - strand, within IAI47_19925at 212.540 kb on - strand, within IAI47_19925at 212.540 kb on - strand, within IAI47_19925at 212.569 kb on + strand, within IAI47_19925at 212.574 kb on + strand, within IAI47_19925at 212.575 kb on - strand, within IAI47_19925at 212.595 kb on + strand, within IAI47_19925at 212.613 kb on + strand, within IAI47_19925at 212.643 kb on - strand, within IAI47_19925at 212.659 kb on - strand, within IAI47_19925at 212.664 kb on + strand, within IAI47_19925at 212.664 kb on + strand, within IAI47_19925at 212.664 kb on + strand, within IAI47_19925at 212.664 kb on + strand, within IAI47_19925at 212.664 kb on + strand, within IAI47_19925at 212.664 kb on + strand, within IAI47_19925at 212.664 kb on + strand, within IAI47_19925at 212.665 kb on - strand, within IAI47_19925at 212.665 kb on - strand, within IAI47_19925at 212.665 kb on - strand, within IAI47_19925at 212.665 kb on - strand, within IAI47_19925at 212.667 kb on + strand, within IAI47_19925at 212.667 kb on + strand, within IAI47_19925at 212.668 kb on - strand, within IAI47_19925at 212.668 kb on - strand, within IAI47_19925at 212.668 kb on - strand, within IAI47_19925at 212.669 kb on + strand, within IAI47_19925at 212.669 kb on + strand, within IAI47_19925at 212.669 kb on + strand, within IAI47_19925at 212.669 kb on + strand, within IAI47_19925at 212.669 kb on + strand, within IAI47_19925at 212.669 kb on + strand, within IAI47_19925at 212.669 kb on + strand, within IAI47_19925at 212.669 kb on + strand, within IAI47_19925at 212.670 kb on - strand, within IAI47_19925at 212.670 kb on - strand, within IAI47_19925at 212.670 kb on - strand, within IAI47_19925at 212.670 kb on - strand, within IAI47_19925at 212.670 kb on - strand, within IAI47_19925at 212.670 kb on - strand, within IAI47_19925at 212.670 kb on - strand, within IAI47_19925at 212.670 kb on - strand, within IAI47_19925at 212.670 kb on - strand, within IAI47_19925at 212.670 kb on - strand, within IAI47_19925at 212.670 kb on - strand, within IAI47_19925at 212.670 kb on - strand, within IAI47_19925at 212.670 kb on - strand, within IAI47_19925at 212.670 kb on - strand, within IAI47_19925at 212.673 kb on + strand, within IAI47_19925at 212.673 kb on + strand, within IAI47_19925at 212.674 kb on - strand, within IAI47_19925at 212.674 kb on - strand, within IAI47_19925at 212.674 kb on - strand, within IAI47_19925at 212.674 kb on - strand, within IAI47_19925at 212.675 kb on + strand, within IAI47_19925at 212.675 kb on + strand, within IAI47_19925at 212.675 kb on + strand, within IAI47_19925at 212.675 kb on + strand, within IAI47_19925at 212.675 kb on + strand, within IAI47_19925at 212.675 kb on + strand, within IAI47_19925at 212.676 kb on - strand, within IAI47_19925at 212.676 kb on - strand, within IAI47_19925at 212.676 kb on - strand, within IAI47_19925at 212.725 kb on - strand, within IAI47_19925at 212.752 kb on + strand, within IAI47_19925at 212.784 kb on + strand, within IAI47_19925at 212.784 kb on + strand, within IAI47_19925at 212.785 kb on - strand, within IAI47_19925at 212.799 kb on + strand, within IAI47_19925at 212.801 kb on + strand, within IAI47_19925at 212.802 kb on - strand, within IAI47_19925at 212.802 kb on - strand, within IAI47_19925at 212.805 kb on + strand, within IAI47_19925at 212.805 kb on + strand, within IAI47_19925at 212.805 kb on + strand, within IAI47_19925at 212.806 kb on - strand, within IAI47_19925at 212.809 kb on + strand, within IAI47_19925at 212.837 kb on + strand, within IAI47_19925at 212.843 kb on + strand, within IAI47_19925at 212.844 kb on - strand, within IAI47_19925at 212.871 kb on - strand, within IAI47_19925at 212.880 kb on + strand, within IAI47_19925at 212.901 kb on + strand, within IAI47_19925at 212.980 kb on + strand, within IAI47_19925at 212.980 kb on + strand, within IAI47_19925at 212.992 kb on + strand, within IAI47_19925at 213.036 kb on + strandat 213.036 kb on + strandat 213.036 kb on + strandat 213.052 kb on - strandat 213.120 kb on + strandat 213.121 kb on - strandat 213.140 kb on + strandat 213.171 kb on + strandat 213.172 kb on - strandat 213.172 kb on - strandat 213.190 kb on - strandat 213.206 kb on - strandat 213.208 kb on - strandat 213.208 kb on - strandat 213.208 kb on - strandat 213.223 kb on - strandat 213.309 kb on + strandat 213.309 kb on + strandat 213.310 kb on - strandat 213.310 kb on - strandat 213.314 kb on - strandat 213.383 kb on + strand, within IAI47_19930at 213.384 kb on - strand, within IAI47_19930at 213.384 kb on - strand, within IAI47_19930at 213.455 kb on + strand, within IAI47_19930at 213.456 kb on - strand, within IAI47_19930at 213.467 kb on + strand, within IAI47_19930at 213.486 kb on + strand, within IAI47_19930at 213.486 kb on + strand, within IAI47_19930at 213.494 kb on + strand, within IAI47_19930at 213.494 kb on + strand, within IAI47_19930at 213.494 kb on + strand, within IAI47_19930at 213.495 kb on - strand, within IAI47_19930at 213.515 kb on + strand, within IAI47_19930at 213.515 kb on + strand, within IAI47_19930at 213.530 kb on + strand, within IAI47_19930at 213.530 kb on + strand, within IAI47_19930at 213.531 kb on - strand, within IAI47_19930at 213.531 kb on - strand, within IAI47_19930at 213.534 kb on + strand, within IAI47_19930at 213.534 kb on + strand, within IAI47_19930at 213.534 kb on + strand, within IAI47_19930at 213.652 kb on + strand, within IAI47_19930at 213.659 kb on + strand, within IAI47_19930at 213.732 kb on + strand, within IAI47_19930at 213.743 kb on + strand, within IAI47_19930at 213.809 kb on + strandat 214.061 kb on + strand, within IAI47_19935at 214.116 kb on + strand, within IAI47_19935at 214.151 kb on + strand, within IAI47_19935at 214.152 kb on - strand, within IAI47_19935at 214.152 kb on - strand, within IAI47_19935at 214.208 kb on + strand, within IAI47_19935at 214.289 kb on + strand, within IAI47_19935at 214.289 kb on + strand, within IAI47_19935at 214.290 kb on - strand, within IAI47_19935at 214.379 kb on + strand, within IAI47_19935at 214.379 kb on + strand, within IAI47_19935at 214.379 kb on + strand, within IAI47_19935at 214.382 kb on + strand, within IAI47_19935at 214.403 kb on + strand, within IAI47_19935at 214.403 kb on + strand, within IAI47_19935at 214.532 kb on - strand, within IAI47_19935at 214.576 kb on + strand, within IAI47_19935at 214.576 kb on + strand, within IAI47_19935at 214.576 kb on + strand, within IAI47_19935at 214.577 kb on - strand, within IAI47_19935at 214.688 kb on + strandat 214.749 kb on + strandat 214.822 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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212,334 + IAI47_19925 0.61 +0.3
212,334 + IAI47_19925 0.61 +0.4
212,335 - IAI47_19925 0.61 +0.8
212,342 - IAI47_19925 0.62 -0.5
212,343 + IAI47_19925 0.62 +0.1
212,343 + IAI47_19925 0.62 +0.7
212,343 + IAI47_19925 0.62 -0.5
212,343 + IAI47_19925 0.62 -0.7
212,343 + IAI47_19925 0.62 -0.7
212,344 - IAI47_19925 0.62 +1.2
212,344 - IAI47_19925 0.62 -1.0
212,348 + IAI47_19925 0.62 -1.2
212,348 + IAI47_19925 0.62 -0.9
212,348 + IAI47_19925 0.62 -1.6
212,349 - IAI47_19925 0.62 +1.3
212,349 - IAI47_19925 0.62 +0.4
212,399 - IAI47_19925 0.64 +1.6
212,399 - IAI47_19925 0.64 +0.4
212,409 + IAI47_19925 0.65 -0.5
212,454 + IAI47_19925 0.66 +0.7
212,454 + IAI47_19925 0.66 +1.3
212,455 - IAI47_19925 0.66 +0.7
212,455 - IAI47_19925 0.66 +1.0
212,455 - IAI47_19925 0.66 -0.0
212,468 + IAI47_19925 0.67 -1.3
212,468 + IAI47_19925 0.67 -1.7
212,469 - IAI47_19925 0.67 +0.7
212,469 - IAI47_19925 0.67 -1.3
212,469 - IAI47_19925 0.67 +1.8
212,469 - IAI47_19925 0.67 -0.8
212,469 - IAI47_19925 0.67 +0.0
212,497 - IAI47_19925 0.68 +1.0
212,512 - IAI47_19925 0.69 +2.3
212,512 - IAI47_19925 0.69 -1.4
212,512 - IAI47_19925 0.69 -0.9
212,512 - IAI47_19925 0.69 -1.1
212,539 + IAI47_19925 0.70 +0.3
212,540 - IAI47_19925 0.70 +0.6
212,540 - IAI47_19925 0.70 +1.2
212,540 - IAI47_19925 0.70 -0.0
212,569 + IAI47_19925 0.71 +2.3
212,574 + IAI47_19925 0.71 -0.0
212,575 - IAI47_19925 0.71 -0.4
212,595 + IAI47_19925 0.72 -0.4
212,613 + IAI47_19925 0.73 -1.0
212,643 - IAI47_19925 0.74 -0.5
212,659 - IAI47_19925 0.75 -0.7
212,664 + IAI47_19925 0.75 -0.6
212,664 + IAI47_19925 0.75 +1.6
212,664 + IAI47_19925 0.75 +0.7
212,664 + IAI47_19925 0.75 +0.7
212,664 + IAI47_19925 0.75 +1.3
212,664 + IAI47_19925 0.75 -2.0
212,664 + IAI47_19925 0.75 -0.0
212,665 - IAI47_19925 0.75 +0.6
212,665 - IAI47_19925 0.75 +1.5
212,665 - IAI47_19925 0.75 -1.2
212,665 - IAI47_19925 0.75 +1.0
212,667 + IAI47_19925 0.75 -0.3
212,667 + IAI47_19925 0.75 +0.5
212,668 - IAI47_19925 0.75 -0.0
212,668 - IAI47_19925 0.75 +0.3
212,668 - IAI47_19925 0.75 -2.2
212,669 + IAI47_19925 0.75 +1.1
212,669 + IAI47_19925 0.75 -1.2
212,669 + IAI47_19925 0.75 +0.7
212,669 + IAI47_19925 0.75 -2.8
212,669 + IAI47_19925 0.75 -0.3
212,669 + IAI47_19925 0.75 -0.2
212,669 + IAI47_19925 0.75 +0.2
212,669 + IAI47_19925 0.75 -0.5
212,670 - IAI47_19925 0.75 +0.1
212,670 - IAI47_19925 0.75 +0.1
212,670 - IAI47_19925 0.75 +0.3
212,670 - IAI47_19925 0.75 -0.9
212,670 - IAI47_19925 0.75 -1.5
212,670 - IAI47_19925 0.75 -0.4
212,670 - IAI47_19925 0.75 +0.2
212,670 - IAI47_19925 0.75 -0.9
212,670 - IAI47_19925 0.75 -1.3
212,670 - IAI47_19925 0.75 +1.1
212,670 - IAI47_19925 0.75 +0.1
212,670 - IAI47_19925 0.75 -1.1
212,670 - IAI47_19925 0.75 -1.9
212,670 - IAI47_19925 0.75 -0.3
212,673 + IAI47_19925 0.75 +0.5
212,673 + IAI47_19925 0.75 -0.1
212,674 - IAI47_19925 0.75 -0.5
212,674 - IAI47_19925 0.75 +1.5
212,674 - IAI47_19925 0.75 -0.9
212,674 - IAI47_19925 0.75 +1.3
212,675 + IAI47_19925 0.75 -0.4
212,675 + IAI47_19925 0.75 +1.4
212,675 + IAI47_19925 0.75 -0.3
212,675 + IAI47_19925 0.75 +1.2
212,675 + IAI47_19925 0.75 +0.4
212,675 + IAI47_19925 0.75 +0.5
212,676 - IAI47_19925 0.75 +0.3
212,676 - IAI47_19925 0.75 +1.3
212,676 - IAI47_19925 0.75 -0.7
212,725 - IAI47_19925 0.77 +1.3
212,752 + IAI47_19925 0.78 -0.7
212,784 + IAI47_19925 0.80 +1.4
212,784 + IAI47_19925 0.80 +1.7
212,785 - IAI47_19925 0.80 +0.1
212,799 + IAI47_19925 0.80 +2.3
212,801 + IAI47_19925 0.80 +0.5
212,802 - IAI47_19925 0.81 -0.3
212,802 - IAI47_19925 0.81 +0.7
212,805 + IAI47_19925 0.81 -0.5
212,805 + IAI47_19925 0.81 +0.7
212,805 + IAI47_19925 0.81 -0.7
212,806 - IAI47_19925 0.81 -1.1
212,809 + IAI47_19925 0.81 +0.9
212,837 + IAI47_19925 0.82 +0.3
212,843 + IAI47_19925 0.82 -0.4
212,844 - IAI47_19925 0.82 +0.3
212,871 - IAI47_19925 0.83 +0.3
212,880 + IAI47_19925 0.84 -1.8
212,901 + IAI47_19925 0.85 +0.7
212,980 + IAI47_19925 0.88 +2.0
212,980 + IAI47_19925 0.88 +1.1
212,992 + IAI47_19925 0.88 +0.4
213,036 + -0.9
213,036 + -0.5
213,036 + -1.0
213,052 - +0.9
213,120 + -0.2
213,121 - -0.0
213,140 + -1.4
213,171 + +2.3
213,172 - +1.1
213,172 - -0.3
213,190 - +0.1
213,206 - +0.1
213,208 - -1.5
213,208 - -1.3
213,208 - +1.0
213,223 - -1.3
213,309 + -0.0
213,309 + -0.3
213,310 - +1.3
213,310 - -0.8
213,314 - -0.9
213,383 + IAI47_19930 0.13 +0.3
213,384 - IAI47_19930 0.13 -1.4
213,384 - IAI47_19930 0.13 +2.3
213,455 + IAI47_19930 0.26 +0.7
213,456 - IAI47_19930 0.26 -2.0
213,467 + IAI47_19930 0.28 +2.3
213,486 + IAI47_19930 0.32 -0.9
213,486 + IAI47_19930 0.32 +0.1
213,494 + IAI47_19930 0.34 -1.8
213,494 + IAI47_19930 0.34 +0.3
213,494 + IAI47_19930 0.34 -0.5
213,495 - IAI47_19930 0.34 -0.9
213,515 + IAI47_19930 0.37 +1.0
213,515 + IAI47_19930 0.37 -1.0
213,530 + IAI47_19930 0.40 -0.5
213,530 + IAI47_19930 0.40 +1.3
213,531 - IAI47_19930 0.40 +0.1
213,531 - IAI47_19930 0.40 +0.2
213,534 + IAI47_19930 0.41 -0.9
213,534 + IAI47_19930 0.41 -0.0
213,534 + IAI47_19930 0.41 +0.1
213,652 + IAI47_19930 0.63 -0.5
213,659 + IAI47_19930 0.64 +0.4
213,732 + IAI47_19930 0.78 -0.0
213,743 + IAI47_19930 0.80 -1.6
213,809 + -0.7
214,061 + IAI47_19935 0.19 -0.9
214,116 + IAI47_19935 0.26 -1.4
214,151 + IAI47_19935 0.31 -2.0
214,152 - IAI47_19935 0.31 -0.5
214,152 - IAI47_19935 0.31 -1.2
214,208 + IAI47_19935 0.39 -0.5
214,289 + IAI47_19935 0.49 +1.3
214,289 + IAI47_19935 0.49 -0.9
214,290 - IAI47_19935 0.50 -1.3
214,379 + IAI47_19935 0.62 +0.1
214,379 + IAI47_19935 0.62 -1.8
214,379 + IAI47_19935 0.62 +0.3
214,382 + IAI47_19935 0.62 +0.3
214,403 + IAI47_19935 0.65 -0.3
214,403 + IAI47_19935 0.65 -0.3
214,532 - IAI47_19935 0.82 -0.0
214,576 + IAI47_19935 0.88 +0.6
214,576 + IAI47_19935 0.88 -1.0
214,576 + IAI47_19935 0.88 -0.3
214,577 - IAI47_19935 0.88 -1.8
214,688 + +0.3
214,749 + -0.5
214,822 + -0.5

Or see this region's nucleotide sequence