Strain Fitness in Pantoea sp. MT58 around IAI47_18915

Experiment: Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_18910 and IAI47_18915 are separated by 203 nucleotidesIAI47_18915 and IAI47_18920 are separated by 391 nucleotidesIAI47_18920 and IAI47_18925 overlap by 47 nucleotides IAI47_18910: IAI47_18910 - MCP four helix bundle domain-containing protein, at 19,001 to 20,554 _18910 IAI47_18915: IAI47_18915 - GNAT family N-acetyltransferase, at 20,758 to 21,312 _18915 IAI47_18920: IAI47_18920 - TetR/AcrR family transcriptional regulator, at 21,704 to 22,291 _18920 IAI47_18925: IAI47_18925 - LysR family transcriptional regulator, at 22,245 to 23,138 _18925 Position (kb) 20 21 22Strain fitness (log2 ratio) -2 -1 0 1 2 3at 19.759 kb on + strand, within IAI47_18910at 19.759 kb on + strand, within IAI47_18910at 19.759 kb on + strand, within IAI47_18910at 19.759 kb on + strand, within IAI47_18910at 19.760 kb on - strand, within IAI47_18910at 19.760 kb on - strand, within IAI47_18910at 19.762 kb on + strand, within IAI47_18910at 19.762 kb on + strand, within IAI47_18910at 19.762 kb on + strand, within IAI47_18910at 19.762 kb on + strand, within IAI47_18910at 19.762 kb on + strand, within IAI47_18910at 19.762 kb on + strand, within IAI47_18910at 19.762 kb on + strand, within IAI47_18910at 19.762 kb on + strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.942 kb on + strand, within IAI47_18910at 19.942 kb on + strand, within IAI47_18910at 19.943 kb on - strand, within IAI47_18910at 19.945 kb on + strand, within IAI47_18910at 19.945 kb on + strand, within IAI47_18910at 19.945 kb on + strand, within IAI47_18910at 19.946 kb on - strand, within IAI47_18910at 19.946 kb on - strand, within IAI47_18910at 20.047 kb on + strand, within IAI47_18910at 20.047 kb on + strand, within IAI47_18910at 20.047 kb on + strand, within IAI47_18910at 20.048 kb on - strand, within IAI47_18910at 20.048 kb on - strand, within IAI47_18910at 20.048 kb on - strand, within IAI47_18910at 20.089 kb on - strand, within IAI47_18910at 20.098 kb on + strand, within IAI47_18910at 20.098 kb on + strand, within IAI47_18910at 20.099 kb on - strand, within IAI47_18910at 20.099 kb on - strand, within IAI47_18910at 20.099 kb on - strand, within IAI47_18910at 20.113 kb on + strand, within IAI47_18910at 20.114 kb on - strand, within IAI47_18910at 20.114 kb on - strand, within IAI47_18910at 20.271 kb on + strand, within IAI47_18910at 20.271 kb on + strand, within IAI47_18910at 20.271 kb on + strand, within IAI47_18910at 20.272 kb on - strand, within IAI47_18910at 20.334 kb on + strand, within IAI47_18910at 20.334 kb on + strand, within IAI47_18910at 20.334 kb on + strand, within IAI47_18910at 20.335 kb on - strand, within IAI47_18910at 20.335 kb on - strand, within IAI47_18910at 20.359 kb on + strand, within IAI47_18910at 20.360 kb on - strand, within IAI47_18910at 20.362 kb on + strand, within IAI47_18910at 20.362 kb on + strand, within IAI47_18910at 20.362 kb on + strand, within IAI47_18910at 20.363 kb on - strand, within IAI47_18910at 20.363 kb on - strand, within IAI47_18910at 20.363 kb on - strand, within IAI47_18910at 20.552 kb on + strandat 20.552 kb on + strandat 20.552 kb on + strandat 20.553 kb on - strandat 20.553 kb on - strandat 20.553 kb on - strandat 20.553 kb on - strandat 20.566 kb on - strandat 20.572 kb on + strandat 20.573 kb on - strandat 20.606 kb on + strandat 20.606 kb on + strandat 20.617 kb on - strandat 20.617 kb on - strandat 20.720 kb on + strandat 20.720 kb on + strandat 20.721 kb on - strandat 20.721 kb on - strandat 20.721 kb on - strandat 20.728 kb on + strandat 20.739 kb on + strandat 20.743 kb on + strandat 20.743 kb on + strandat 20.743 kb on + strandat 20.743 kb on + strandat 20.743 kb on + strandat 20.744 kb on - strandat 20.744 kb on - strandat 20.744 kb on - strandat 20.780 kb on + strandat 20.780 kb on + strandat 20.780 kb on + strandat 20.785 kb on + strandat 20.793 kb on + strandat 20.793 kb on + strandat 20.793 kb on + strandat 20.798 kb on + strandat 20.798 kb on + strandat 20.798 kb on + strandat 20.799 kb on - strandat 20.830 kb on + strand, within IAI47_18915at 20.830 kb on + strand, within IAI47_18915at 20.831 kb on - strand, within IAI47_18915at 20.831 kb on - strand, within IAI47_18915at 20.831 kb on - strand, within IAI47_18915at 20.831 kb on - strand, within IAI47_18915at 20.831 kb on - strand, within IAI47_18915at 20.850 kb on + strand, within IAI47_18915at 20.850 kb on + strand, within IAI47_18915at 20.850 kb on + strand, within IAI47_18915at 20.850 kb on + strand, within IAI47_18915at 20.851 kb on - strand, within IAI47_18915at 20.851 kb on - strand, within IAI47_18915at 20.851 kb on - strand, within IAI47_18915at 20.851 kb on - strand, within IAI47_18915at 20.857 kb on - strand, within IAI47_18915at 20.887 kb on + strand, within IAI47_18915at 20.887 kb on + strand, within IAI47_18915at 20.887 kb on + strand, within IAI47_18915at 20.887 kb on + strand, within IAI47_18915at 20.887 kb on + strand, within IAI47_18915at 20.887 kb on + strand, within IAI47_18915at 20.887 kb on + strand, within IAI47_18915at 20.888 kb on - strand, within IAI47_18915at 20.901 kb on + strand, within IAI47_18915at 20.901 kb on + strand, within IAI47_18915at 20.901 kb on + strand, within IAI47_18915at 20.902 kb on - strand, within IAI47_18915at 20.902 kb on - strand, within IAI47_18915at 20.902 kb on - strand, within IAI47_18915at 20.910 kb on + strand, within IAI47_18915at 20.910 kb on + strand, within IAI47_18915at 20.911 kb on - strand, within IAI47_18915at 20.911 kb on - strand, within IAI47_18915at 20.913 kb on - strand, within IAI47_18915at 20.913 kb on - strand, within IAI47_18915at 20.913 kb on - strand, within IAI47_18915at 20.924 kb on - strand, within IAI47_18915at 20.924 kb on - strand, within IAI47_18915at 20.954 kb on + strand, within IAI47_18915at 20.954 kb on + strand, within IAI47_18915at 20.955 kb on - strand, within IAI47_18915at 21.000 kb on - strand, within IAI47_18915at 21.000 kb on - strand, within IAI47_18915at 21.034 kb on - strand, within IAI47_18915at 21.076 kb on + strand, within IAI47_18915at 21.102 kb on + strand, within IAI47_18915at 21.103 kb on - strand, within IAI47_18915at 21.103 kb on - strand, within IAI47_18915at 21.103 kb on - strand, within IAI47_18915at 21.138 kb on + strand, within IAI47_18915at 21.139 kb on - strand, within IAI47_18915at 21.139 kb on - strand, within IAI47_18915at 21.150 kb on - strand, within IAI47_18915at 21.201 kb on - strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.254 kb on - strand, within IAI47_18915at 21.254 kb on - strand, within IAI47_18915at 21.254 kb on - strand, within IAI47_18915at 21.254 kb on - strand, within IAI47_18915at 21.254 kb on - strand, within IAI47_18915at 21.254 kb on - strand, within IAI47_18915at 21.255 kb on + strand, within IAI47_18915at 21.256 kb on - strand, within IAI47_18915at 21.321 kb on + strandat 21.321 kb on + strandat 21.321 kb on + strandat 21.321 kb on + strandat 21.321 kb on + strandat 21.321 kb on + strandat 21.321 kb on + strandat 21.321 kb on + strandat 21.321 kb on + strandat 21.322 kb on - strandat 21.322 kb on - strandat 21.322 kb on - strandat 21.322 kb on - strandat 21.323 kb on + strandat 21.323 kb on + strandat 21.323 kb on + strandat 21.323 kb on + strandat 21.324 kb on - strandat 21.324 kb on - strandat 21.416 kb on + strandat 21.417 kb on - strandat 21.421 kb on + strandat 21.430 kb on + strandat 21.431 kb on - strandat 21.446 kb on + strandat 21.446 kb on + strandat 21.446 kb on + strandat 21.446 kb on + strandat 21.447 kb on - strandat 21.447 kb on - strandat 21.447 kb on - strandat 21.453 kb on - strandat 21.496 kb on + strandat 21.497 kb on - strandat 21.499 kb on - strandat 21.536 kb on + strandat 21.536 kb on + strandat 21.536 kb on + strandat 21.536 kb on + strandat 21.537 kb on - strandat 21.564 kb on - strandat 21.579 kb on + strandat 21.580 kb on - strandat 21.594 kb on + strandat 21.594 kb on + strandat 21.595 kb on - strandat 21.630 kb on + strandat 21.667 kb on + strandat 21.745 kb on + strandat 21.745 kb on + strandat 21.746 kb on - strandat 21.746 kb on - strandat 21.746 kb on - strandat 21.746 kb on - strandat 21.763 kb on + strand, within IAI47_18920at 21.763 kb on + strand, within IAI47_18920at 21.763 kb on + strand, within IAI47_18920at 21.764 kb on - strand, within IAI47_18920at 21.780 kb on + strand, within IAI47_18920at 21.903 kb on + strand, within IAI47_18920at 21.937 kb on + strand, within IAI47_18920at 21.937 kb on + strand, within IAI47_18920at 21.938 kb on - strand, within IAI47_18920at 21.961 kb on + strand, within IAI47_18920at 21.961 kb on + strand, within IAI47_18920at 21.962 kb on - strand, within IAI47_18920at 21.962 kb on - strand, within IAI47_18920at 21.962 kb on - strand, within IAI47_18920at 22.000 kb on + strand, within IAI47_18920at 22.000 kb on + strand, within IAI47_18920at 22.001 kb on - strand, within IAI47_18920at 22.079 kb on + strand, within IAI47_18920at 22.079 kb on + strand, within IAI47_18920at 22.079 kb on + strand, within IAI47_18920at 22.080 kb on - strand, within IAI47_18920at 22.080 kb on - strand, within IAI47_18920at 22.080 kb on - strand, within IAI47_18920at 22.080 kb on - strand, within IAI47_18920at 22.080 kb on - strand, within IAI47_18920at 22.080 kb on - strand, within IAI47_18920at 22.174 kb on + strand, within IAI47_18920at 22.174 kb on + strand, within IAI47_18920at 22.175 kb on - strand, within IAI47_18920at 22.175 kb on - strand, within IAI47_18920at 22.204 kb on + strand, within IAI47_18920at 22.246 kb on + strandat 22.247 kb on - strandat 22.310 kb on + strandat 22.310 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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19,759 + IAI47_18910 0.49 -0.3
19,759 + IAI47_18910 0.49 +1.5
19,759 + IAI47_18910 0.49 -1.9
19,759 + IAI47_18910 0.49 -0.5
19,760 - IAI47_18910 0.49 -0.9
19,760 - IAI47_18910 0.49 -0.2
19,762 + IAI47_18910 0.49 +0.2
19,762 + IAI47_18910 0.49 +1.2
19,762 + IAI47_18910 0.49 +1.9
19,762 + IAI47_18910 0.49 -0.1
19,762 + IAI47_18910 0.49 +1.0
19,762 + IAI47_18910 0.49 +2.6
19,762 + IAI47_18910 0.49 +0.2
19,762 + IAI47_18910 0.49 +0.0
19,763 - IAI47_18910 0.49 -0.1
19,763 - IAI47_18910 0.49 +1.2
19,763 - IAI47_18910 0.49 +1.2
19,763 - IAI47_18910 0.49 -0.4
19,763 - IAI47_18910 0.49 -0.8
19,763 - IAI47_18910 0.49 -0.1
19,763 - IAI47_18910 0.49 -0.1
19,763 - IAI47_18910 0.49 -0.4
19,763 - IAI47_18910 0.49 -1.0
19,763 - IAI47_18910 0.49 +0.6
19,763 - IAI47_18910 0.49 -0.7
19,942 + IAI47_18910 0.61 +0.9
19,942 + IAI47_18910 0.61 +0.9
19,943 - IAI47_18910 0.61 +1.2
19,945 + IAI47_18910 0.61 +0.0
19,945 + IAI47_18910 0.61 +0.6
19,945 + IAI47_18910 0.61 +1.2
19,946 - IAI47_18910 0.61 +1.8
19,946 - IAI47_18910 0.61 -0.5
20,047 + IAI47_18910 0.67 -1.5
20,047 + IAI47_18910 0.67 -0.4
20,047 + IAI47_18910 0.67 +2.6
20,048 - IAI47_18910 0.67 +0.6
20,048 - IAI47_18910 0.67 +0.4
20,048 - IAI47_18910 0.67 +1.0
20,089 - IAI47_18910 0.70 +0.1
20,098 + IAI47_18910 0.71 +2.2
20,098 + IAI47_18910 0.71 +0.9
20,099 - IAI47_18910 0.71 +0.3
20,099 - IAI47_18910 0.71 -0.6
20,099 - IAI47_18910 0.71 +0.2
20,113 + IAI47_18910 0.72 +0.6
20,114 - IAI47_18910 0.72 -0.6
20,114 - IAI47_18910 0.72 +0.8
20,271 + IAI47_18910 0.82 -2.1
20,271 + IAI47_18910 0.82 +0.4
20,271 + IAI47_18910 0.82 -0.6
20,272 - IAI47_18910 0.82 -0.1
20,334 + IAI47_18910 0.86 +2.8
20,334 + IAI47_18910 0.86 -0.1
20,334 + IAI47_18910 0.86 -1.5
20,335 - IAI47_18910 0.86 -0.8
20,335 - IAI47_18910 0.86 -1.4
20,359 + IAI47_18910 0.87 -0.6
20,360 - IAI47_18910 0.87 -0.8
20,362 + IAI47_18910 0.88 -0.1
20,362 + IAI47_18910 0.88 -0.7
20,362 + IAI47_18910 0.88 -0.5
20,363 - IAI47_18910 0.88 -0.4
20,363 - IAI47_18910 0.88 -1.5
20,363 - IAI47_18910 0.88 -1.5
20,552 + -1.3
20,552 + +1.2
20,552 + -0.3
20,553 - -0.4
20,553 - +1.2
20,553 - -0.4
20,553 - -1.0
20,566 - +1.4
20,572 + -0.6
20,573 - +1.0
20,606 + +1.2
20,606 + -0.1
20,617 - -1.8
20,617 - -0.5
20,720 + +0.2
20,720 + +0.2
20,721 - -0.2
20,721 - -0.8
20,721 - -0.1
20,728 + +1.2
20,739 + +0.1
20,743 + +0.4
20,743 + -0.1
20,743 + +0.5
20,743 + -0.8
20,743 + -1.1
20,744 - -1.0
20,744 - +0.9
20,744 - +0.6
20,780 + -1.1
20,780 + +0.4
20,780 + -0.2
20,785 + +1.5
20,793 + +0.6
20,793 + -0.4
20,793 + +1.2
20,798 + -1.0
20,798 + +0.0
20,798 + -1.6
20,799 - -0.6
20,830 + IAI47_18915 0.13 +1.2
20,830 + IAI47_18915 0.13 +1.2
20,831 - IAI47_18915 0.13 -1.4
20,831 - IAI47_18915 0.13 +0.2
20,831 - IAI47_18915 0.13 +0.9
20,831 - IAI47_18915 0.13 +0.9
20,831 - IAI47_18915 0.13 -2.0
20,850 + IAI47_18915 0.17 +0.5
20,850 + IAI47_18915 0.17 +0.4
20,850 + IAI47_18915 0.17 -1.0
20,850 + IAI47_18915 0.17 +1.4
20,851 - IAI47_18915 0.17 -1.7
20,851 - IAI47_18915 0.17 -1.1
20,851 - IAI47_18915 0.17 -1.4
20,851 - IAI47_18915 0.17 -1.9
20,857 - IAI47_18915 0.18 +0.2
20,887 + IAI47_18915 0.23 +0.2
20,887 + IAI47_18915 0.23 -1.7
20,887 + IAI47_18915 0.23 +0.2
20,887 + IAI47_18915 0.23 +1.2
20,887 + IAI47_18915 0.23 -0.6
20,887 + IAI47_18915 0.23 +1.3
20,887 + IAI47_18915 0.23 +2.0
20,888 - IAI47_18915 0.23 +1.5
20,901 + IAI47_18915 0.26 +3.2
20,901 + IAI47_18915 0.26 -0.6
20,901 + IAI47_18915 0.26 +0.9
20,902 - IAI47_18915 0.26 -0.4
20,902 - IAI47_18915 0.26 +0.1
20,902 - IAI47_18915 0.26 +0.6
20,910 + IAI47_18915 0.27 +0.6
20,910 + IAI47_18915 0.27 +0.2
20,911 - IAI47_18915 0.28 +0.4
20,911 - IAI47_18915 0.28 -0.8
20,913 - IAI47_18915 0.28 -0.1
20,913 - IAI47_18915 0.28 +0.3
20,913 - IAI47_18915 0.28 +1.6
20,924 - IAI47_18915 0.30 +2.6
20,924 - IAI47_18915 0.30 +2.2
20,954 + IAI47_18915 0.35 +0.3
20,954 + IAI47_18915 0.35 -1.6
20,955 - IAI47_18915 0.35 -0.8
21,000 - IAI47_18915 0.44 -0.6
21,000 - IAI47_18915 0.44 -1.5
21,034 - IAI47_18915 0.50 -0.6
21,076 + IAI47_18915 0.57 +0.4
21,102 + IAI47_18915 0.62 +0.4
21,103 - IAI47_18915 0.62 -1.1
21,103 - IAI47_18915 0.62 -1.0
21,103 - IAI47_18915 0.62 -0.9
21,138 + IAI47_18915 0.68 +0.7
21,139 - IAI47_18915 0.69 +0.1
21,139 - IAI47_18915 0.69 -1.8
21,150 - IAI47_18915 0.71 -1.5
21,201 - IAI47_18915 0.80 +1.5
21,253 + IAI47_18915 0.89 +1.2
21,253 + IAI47_18915 0.89 +0.9
21,253 + IAI47_18915 0.89 -0.7
21,253 + IAI47_18915 0.89 -0.1
21,253 + IAI47_18915 0.89 +2.8
21,253 + IAI47_18915 0.89 +0.9
21,253 + IAI47_18915 0.89 +2.2
21,253 + IAI47_18915 0.89 +2.0
21,253 + IAI47_18915 0.89 +0.5
21,253 + IAI47_18915 0.89 -0.1
21,253 + IAI47_18915 0.89 +0.8
21,254 - IAI47_18915 0.89 -0.9
21,254 - IAI47_18915 0.89 +0.4
21,254 - IAI47_18915 0.89 +1.2
21,254 - IAI47_18915 0.89 +0.6
21,254 - IAI47_18915 0.89 +0.9
21,254 - IAI47_18915 0.89 +1.2
21,255 + IAI47_18915 0.90 +0.1
21,256 - IAI47_18915 0.90 -1.6
21,321 + -2.0
21,321 + +2.2
21,321 + -0.1
21,321 + +0.7
21,321 + +0.0
21,321 + -0.5
21,321 + -0.9
21,321 + -0.2
21,321 + +0.3
21,322 - -1.0
21,322 - -0.3
21,322 - +0.6
21,322 - -0.1
21,323 + -0.1
21,323 + +1.1
21,323 + +0.6
21,323 + +1.1
21,324 - -0.2
21,324 - +0.2
21,416 + +1.5
21,417 - +0.2
21,421 + -0.3
21,430 + +0.5
21,431 - -1.2
21,446 + +0.2
21,446 + +1.6
21,446 + +1.2
21,446 + +0.8
21,447 - +0.9
21,447 - -1.0
21,447 - +0.1
21,453 - -1.4
21,496 + -0.1
21,497 - -0.8
21,499 - +0.0
21,536 + +1.0
21,536 + +0.2
21,536 + +0.8
21,536 + -0.1
21,537 - -0.0
21,564 - -1.4
21,579 + -0.4
21,580 - +0.0
21,594 + +3.2
21,594 + +1.9
21,595 - -2.1
21,630 + -1.0
21,667 + +1.6
21,745 + +2.1
21,745 + +0.0
21,746 - -0.1
21,746 - -1.1
21,746 - +2.2
21,746 - -0.4
21,763 + IAI47_18920 0.10 +0.4
21,763 + IAI47_18920 0.10 +0.3
21,763 + IAI47_18920 0.10 -0.8
21,764 - IAI47_18920 0.10 +0.6
21,780 + IAI47_18920 0.13 -0.1
21,903 + IAI47_18920 0.34 +1.2
21,937 + IAI47_18920 0.40 -0.2
21,937 + IAI47_18920 0.40 +2.2
21,938 - IAI47_18920 0.40 +1.2
21,961 + IAI47_18920 0.44 +0.3
21,961 + IAI47_18920 0.44 -0.1
21,962 - IAI47_18920 0.44 -0.6
21,962 - IAI47_18920 0.44 +1.2
21,962 - IAI47_18920 0.44 -0.2
22,000 + IAI47_18920 0.50 +0.4
22,000 + IAI47_18920 0.50 +0.2
22,001 - IAI47_18920 0.51 -0.4
22,079 + IAI47_18920 0.64 -0.8
22,079 + IAI47_18920 0.64 +1.0
22,079 + IAI47_18920 0.64 +0.5
22,080 - IAI47_18920 0.64 +1.2
22,080 - IAI47_18920 0.64 -0.1
22,080 - IAI47_18920 0.64 +0.6
22,080 - IAI47_18920 0.64 -0.1
22,080 - IAI47_18920 0.64 +0.5
22,080 - IAI47_18920 0.64 +0.2
22,174 + IAI47_18920 0.80 +0.6
22,174 + IAI47_18920 0.80 +0.2
22,175 - IAI47_18920 0.80 +0.9
22,175 - IAI47_18920 0.80 -0.6
22,204 + IAI47_18920 0.85 +1.2
22,246 + +0.9
22,247 - +2.9
22,310 + -0.7
22,310 + +2.0

Or see this region's nucleotide sequence