Strain Fitness in Pantoea sp. MT58 around IAI47_15820

Experiment: Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,338,434	-		IAI47_15815	0.44	+1.4
3,338,522	-		IAI47_15815	0.56	+1.5
3,338,522	-		IAI47_15815	0.56	+4.8
3,338,524	+		IAI47_15815	0.56	-0.0
3,338,525	-		IAI47_15815	0.56	+2.6
3,338,525	-		IAI47_15815	0.56	-1.7
3,338,542	-		IAI47_15815	0.58	-0.3
3,338,617	-		IAI47_15815	0.68	+2.1
3,338,674	-		IAI47_15815	0.75	+0.5
3,338,674	-		IAI47_15815	0.75	+1.6
3,338,689	-		IAI47_15815	0.77	+1.6
3,338,793	-				-0.1
3,338,835	-				+0.5
3,338,835	-				+1.6
3,338,835	-				+0.5
3,338,835	-				+3.0
3,338,835	-				+2.1
3,338,835	-				+0.2
3,338,835	-				+0.3
3,338,835	-				+2.2
3,338,835	-				+0.5
3,338,835	-				+1.1
3,338,835	-				+2.4
3,338,835	-				+1.6
3,338,835	-				+1.1
3,338,835	-				+2.1
3,338,835	-				+1.4
3,338,835	-				+1.6
3,338,835	-				+1.8
3,338,835	-				+1.0
3,338,835	-				+2.6
3,338,850	-				-1.4
3,338,850	-				+2.2
3,338,850	-				+1.2
3,338,855	-				+0.9
3,338,855	-				+0.5
3,338,855	-				-0.2
3,338,855	-				+2.0
3,338,855	-				+0.9
3,338,872	+				-1.0
3,338,872	+				-1.0
3,338,873	-				+0.3
3,338,873	-				-0.1
3,338,873	-				+5.4
3,338,873	-				+0.7
3,338,875	+				-1.5
3,338,875	+				+0.7
3,338,876	-				-0.1
3,338,876	-				+0.1
3,338,876	-				+1.7
3,338,876	-				+1.7
3,338,876	-				+0.6
3,338,932	+				+0.1
3,338,933	-				+0.3
3,338,933	-				+0.4
3,338,933	-				+0.4
3,338,941	-				+2.6
3,338,941	-				-0.7
3,338,955	+				+3.6
3,338,955	+				+0.2
3,338,955	+				+1.5
3,338,955	+				+0.0
3,338,955	+				-0.1
3,338,955	+				+1.9
3,338,955	+				-1.2
3,338,955	+				-2.2
3,338,955	+				+0.7
3,338,955	+				-1.5
3,338,956	-				-0.3
3,338,956	-				-0.2
3,338,956	-				+0.3
3,338,956	-				-1.2
3,338,956	-				-0.2
3,338,956	-				-1.3
3,338,956	-				+0.9
3,338,957	+				-0.9
3,338,957	+				-2.3
3,338,957	+				+0.4
3,338,958	-				-0.2
3,338,958	-				+0.4
3,338,958	-				-0.4
3,338,958	-				-1.9
3,338,985	+				-0.5
3,339,051	+				+0.4
3,339,073	+				+0.9
3,339,074	-				-0.5
3,339,074	-				-2.0
3,339,074	-				+0.1
3,339,074	-				-0.6
3,339,074	-				-0.0
3,339,074	-				-0.7
3,339,074	-				+1.1
3,339,083	+				+0.5
3,339,108	+				-0.7
3,339,108	+				-0.5
3,339,108	+				+4.6
3,339,108	+				+1.0
3,339,108	+				+0.9
3,339,109	-				+0.1
3,339,109	-				-2.0
3,339,109	-				+0.5
3,339,109	-				+0.1
3,339,120	-				-1.0
3,339,120	-				-1.0
3,339,242	+				+0.1
3,339,243	-				-0.7
3,339,294	-				-1.3
3,339,375	+				+0.4
3,339,375	+				+0.3
3,339,375	+				-0.9
3,339,376	-				-2.1
3,339,376	-				-2.4
3,339,414	+				-2.5
3,339,414	+				-0.5
3,339,414	+				-0.0
3,339,415	-				-0.5
3,339,415	-				-0.2
3,339,415	-				-0.3
3,339,427	-				+0.6
3,339,427	-				-0.4
3,339,513	+		IAI47_15820	0.10	-0.3
3,339,523	+		IAI47_15820	0.11	+1.1
3,339,524	-		IAI47_15820	0.11	+1.4
3,339,567	-		IAI47_15820	0.14	-0.4
3,339,620	-		IAI47_15820	0.18	-1.5
3,339,620	-		IAI47_15820	0.18	+0.7
3,339,621	+		IAI47_15820	0.18	+4.0
3,339,622	-		IAI47_15820	0.18	-2.0
3,339,622	-		IAI47_15820	0.18	-0.3
3,339,625	+		IAI47_15820	0.18	+0.1
3,339,625	+		IAI47_15820	0.18	+0.8
3,339,625	+		IAI47_15820	0.18	-0.2
3,339,625	+		IAI47_15820	0.18	+0.6
3,339,625	+		IAI47_15820	0.18	+0.5
3,339,626	-		IAI47_15820	0.18	-1.8
3,339,626	-		IAI47_15820	0.18	+0.5
3,339,664	+		IAI47_15820	0.21	+0.1
3,339,664	+		IAI47_15820	0.21	+1.1
3,339,664	+		IAI47_15820	0.21	+1.5
3,339,676	+		IAI47_15820	0.22	-1.0
3,339,676	+		IAI47_15820	0.22	-1.3
3,339,676	+		IAI47_15820	0.22	-0.4
3,339,676	+		IAI47_15820	0.22	-0.4
3,339,676	+		IAI47_15820	0.22	+3.0
3,339,676	+		IAI47_15820	0.22	+1.6
3,339,676	+		IAI47_15820	0.22	+0.7
3,339,676	+		IAI47_15820	0.22	-3.0
3,339,676	+		IAI47_15820	0.22	-1.0
3,339,676	+		IAI47_15820	0.22	-0.3
3,339,676	+		IAI47_15820	0.22	-0.3
3,339,676	+		IAI47_15820	0.22	+1.7
3,339,677	-		IAI47_15820	0.22	+0.3
3,339,677	-		IAI47_15820	0.22	-0.7
3,339,677	-		IAI47_15820	0.22	-1.3
3,339,677	-		IAI47_15820	0.22	-0.7
3,339,677	-		IAI47_15820	0.22	+0.1
3,339,718	+		IAI47_15820	0.25	+1.3
3,339,718	+		IAI47_15820	0.25	+1.5
3,339,718	+		IAI47_15820	0.25	-2.5
3,339,718	+		IAI47_15820	0.25	+0.1
3,339,718	+		IAI47_15820	0.25	-0.7
3,339,718	+		IAI47_15820	0.25	-0.6
3,339,719	-		IAI47_15820	0.25	-1.3
3,339,719	-		IAI47_15820	0.25	-1.4
3,339,719	-		IAI47_15820	0.25	-1.3
3,339,789	+		IAI47_15820	0.30	-0.0
3,339,789	+		IAI47_15820	0.30	-0.5
3,339,789	+		IAI47_15820	0.30	-0.1
3,339,790	-		IAI47_15820	0.31	-1.8
3,339,846	+		IAI47_15820	0.35	-1.3
3,339,846	+		IAI47_15820	0.35	-0.1
3,339,847	-		IAI47_15820	0.35	+0.6
3,339,847	-		IAI47_15820	0.35	-0.9
3,339,847	-		IAI47_15820	0.35	-0.3
3,339,847	-		IAI47_15820	0.35	-1.8
3,339,847	-		IAI47_15820	0.35	-0.3
3,339,926	+		IAI47_15820	0.41	+2.0
3,339,926	+		IAI47_15820	0.41	+0.9
3,339,926	+		IAI47_15820	0.41	+0.0
3,339,996	+		IAI47_15820	0.46	-1.2
3,339,996	+		IAI47_15820	0.46	+3.5
3,339,997	-		IAI47_15820	0.46	+1.7
3,339,997	-		IAI47_15820	0.46	-1.3
3,339,997	-		IAI47_15820	0.46	-2.2
3,340,032	+		IAI47_15820	0.48	+2.7
3,340,032	+		IAI47_15820	0.48	-1.5
3,340,114	+		IAI47_15820	0.54	-0.6
3,340,115	-		IAI47_15820	0.54	-1.5
3,340,191	+		IAI47_15820	0.60	+0.2
3,340,191	+		IAI47_15820	0.60	+0.3
3,340,192	-		IAI47_15820	0.60	-1.3
3,340,234	-		IAI47_15820	0.63	+0.4
3,340,267	+		IAI47_15820	0.66	+1.6
3,340,267	+		IAI47_15820	0.66	-1.4
3,340,267	+		IAI47_15820	0.66	-0.5
3,340,267	+		IAI47_15820	0.66	+0.3
3,340,268	-		IAI47_15820	0.66	-2.3
3,340,268	-		IAI47_15820	0.66	-2.3
3,340,269	+		IAI47_15820	0.66	+0.2
3,340,269	+		IAI47_15820	0.66	+3.2
3,340,269	+		IAI47_15820	0.66	-1.2
3,340,270	-		IAI47_15820	0.66	-2.0
3,340,270	-		IAI47_15820	0.66	+1.3
3,340,270	-		IAI47_15820	0.66	-1.5
3,340,270	-		IAI47_15820	0.66	-1.5
3,340,283	-		IAI47_15820	0.67	-1.2
3,340,283	-		IAI47_15820	0.67	-1.3
3,340,287	+		IAI47_15820	0.67	+0.7
3,340,287	+		IAI47_15820	0.67	-0.4
3,340,287	+		IAI47_15820	0.67	-1.0
3,340,364	+		IAI47_15820	0.73	-0.0
3,340,399	-		IAI47_15820	0.75	-2.3
3,340,399	-		IAI47_15820	0.75	-2.7
3,340,399	-		IAI47_15820	0.75	-0.7
3,340,423	+		IAI47_15820	0.77	+2.8
3,340,423	+		IAI47_15820	0.77	-1.3
3,340,423	+		IAI47_15820	0.77	-1.0
3,340,423	+		IAI47_15820	0.77	-0.1
3,340,423	+		IAI47_15820	0.77	+0.1
3,340,424	-		IAI47_15820	0.77	-1.2
3,340,424	-		IAI47_15820	0.77	-0.3
3,340,424	-		IAI47_15820	0.77	-1.4
3,340,424	-		IAI47_15820	0.77	-0.1
3,340,424	-		IAI47_15820	0.77	-1.0
3,340,527	+		IAI47_15820	0.85	-1.4
3,340,527	+		IAI47_15820	0.85	+0.5
3,340,528	-		IAI47_15820	0.85	-0.2
3,340,528	-		IAI47_15820	0.85	-1.7
3,340,528	-		IAI47_15820	0.85	-2.2
3,340,561	-		IAI47_15820	0.87	-0.4
3,340,561	-		IAI47_15820	0.87	+0.3
3,340,573	+		IAI47_15820	0.88	+0.4
3,340,573	+		IAI47_15820	0.88	-2.0
3,340,573	+		IAI47_15820	0.88	+0.2
3,340,584	+		IAI47_15820	0.89	-0.6
3,340,584	+		IAI47_15820	0.89	-0.0
3,340,585	-		IAI47_15820	0.89	-0.3
3,340,622	+				+0.7
3,340,699	+				-2.9
3,340,699	+				-0.1
3,340,699	+				-0.2
3,340,699	+				-0.1
3,340,700	-				+1.3
3,340,700	-				-1.6
3,340,700	-				-0.5
3,340,704	+				-0.8
3,340,705	-				-2.2
3,340,707	+				-0.9
3,340,707	+				+0.2
3,340,737	+				-0.6
3,340,738	-				+2.3
3,340,738	-				-1.7
3,340,738	-				+0.3
3,340,738	-				-0.3
3,340,740	+				-0.7
3,340,740	+				+3.0
3,340,740	+				-0.5
3,340,740	+				+0.6
3,340,741	-				-1.4
3,340,741	-				+0.3
3,340,741	-				-0.7
3,340,741	-				-1.6
3,340,741	-				-0.5
3,340,741	-				-1.6
3,340,741	-				-0.9
3,340,741	-				-0.4
3,340,775	+				+0.1
3,340,775	+				-0.7
3,340,776	-				-1.9
3,340,776	-				+0.9
3,340,776	-				-1.2
3,340,875	+				+0.5
3,340,875	+				+2.9
3,340,875	+				+0.4
3,340,876	-				+1.8
3,340,906	-				-1.5
3,340,906	-				-0.4
3,340,906	-				-0.7
3,340,906	-				+0.2
3,340,906	-				-0.9
3,340,919	+				+0.8
3,340,919	+				-2.0
3,340,919	+				-0.8
3,340,919	+				+2.0
3,340,919	+				-2.0
3,340,919	+				-1.0
3,340,919	+				-0.5
3,340,920	-				+0.1
3,340,920	-				+0.0
3,341,010	+				-0.8
3,341,010	+				-1.0
3,341,011	-				+0.4
3,341,011	-				+1.2
3,341,011	-				-0.0
3,341,016	+				+1.3
3,341,016	+				-0.1
3,341,016	+				-0.7
3,341,016	+				+0.1
3,341,016	+				-0.3
3,341,016	+				-0.6
3,341,016	+				+0.7
3,341,017	-				-0.1
3,341,017	-				-0.6
3,341,017	-				+0.1
3,341,017	-				+0.6
3,341,017	-				-0.7
3,341,017	-				+2.1
3,341,017	-				-0.7
3,341,017	-				-1.9
3,341,017	-				+0.5
3,341,017	-				-0.9
3,341,017	-				-0.2
3,341,019	-				+0.3
3,341,102	+		IAI47_15825	0.14	+2.4
3,341,178	+		IAI47_15825	0.19	-0.7
3,341,178	+		IAI47_15825	0.19	+0.3
3,341,178	+		IAI47_15825	0.19	-1.4
3,341,178	+		IAI47_15825	0.19	-1.8
3,341,178	+		IAI47_15825	0.19	-0.2
3,341,178	+		IAI47_15825	0.19	-0.6
3,341,179	-		IAI47_15825	0.19	-1.0
3,341,179	-		IAI47_15825	0.19	+0.6
3,341,179	-		IAI47_15825	0.19	-1.0
3,341,179	-		IAI47_15825	0.19	-0.7
3,341,223	+		IAI47_15825	0.22	-0.6
3,341,223	+		IAI47_15825	0.22	+0.4
3,341,223	+		IAI47_15825	0.22	-1.2
3,341,223	+		IAI47_15825	0.22	+0.2
3,341,223	+		IAI47_15825	0.22	-2.2
3,341,224	-		IAI47_15825	0.22	+1.3
3,341,224	-		IAI47_15825	0.22	-2.7
3,341,224	-		IAI47_15825	0.22	+1.0
3,341,256	+		IAI47_15825	0.24	-0.6
3,341,256	+		IAI47_15825	0.24	-1.5
3,341,256	+		IAI47_15825	0.24	-0.0
3,341,257	-		IAI47_15825	0.24	+1.4
3,341,257	-		IAI47_15825	0.24	+0.3
3,341,257	-		IAI47_15825	0.24	+1.0
3,341,277	+		IAI47_15825	0.26	+0.1
3,341,277	+		IAI47_15825	0.26	+0.5
3,341,277	+		IAI47_15825	0.26	+1.0
3,341,277	+		IAI47_15825	0.26	-0.6
3,341,277	+		IAI47_15825	0.26	+0.4
3,341,277	+		IAI47_15825	0.26	+1.6
3,341,277	+		IAI47_15825	0.26	+0.6
3,341,278	-		IAI47_15825	0.26	-0.4
3,341,278	-		IAI47_15825	0.26	-2.6
3,341,278	-		IAI47_15825	0.26	-0.8
3,341,278	-		IAI47_15825	0.26	-1.1
3,341,278	-		IAI47_15825	0.26	-1.4
3,341,279	+		IAI47_15825	0.26	-0.2
3,341,288	+		IAI47_15825	0.27	-0.8
3,341,288	+		IAI47_15825	0.27	+1.3
3,341,288	+		IAI47_15825	0.27	-0.6
3,341,289	-		IAI47_15825	0.27	+1.9
3,341,291	+		IAI47_15825	0.27	+0.3
3,341,291	+		IAI47_15825	0.27	-1.7
3,341,292	-		IAI47_15825	0.27	-0.3
3,341,292	-		IAI47_15825	0.27	-0.1
3,341,292	-		IAI47_15825	0.27	-0.5
3,341,292	-		IAI47_15825	0.27	+0.2
3,341,299	-		IAI47_15825	0.27	+0.2
3,341,299	-		IAI47_15825	0.27	-2.1
3,341,321	+		IAI47_15825	0.29	-0.4
3,341,321	+		IAI47_15825	0.29	+1.7
3,341,321	+		IAI47_15825	0.29	+0.6
3,341,321	+		IAI47_15825	0.29	+0.1
3,341,322	-		IAI47_15825	0.29	+0.7
3,341,322	-		IAI47_15825	0.29	-0.7
3,341,358	+		IAI47_15825	0.32	+1.3
3,341,378	+		IAI47_15825	0.33	-0.2
3,341,392	+		IAI47_15825	0.34	+0.7
3,341,392	+		IAI47_15825	0.34	+0.2
3,341,392	+		IAI47_15825	0.34	+0.8
3,341,393	-		IAI47_15825	0.34	-1.7
3,341,393	-		IAI47_15825	0.34	-0.5
3,341,441	+		IAI47_15825	0.38	-1.2
3,341,441	+		IAI47_15825	0.38	+0.3
3,341,531	+		IAI47_15825	0.44	-0.1
3,341,532	-		IAI47_15825	0.44	-0.0
3,341,630	+		IAI47_15825	0.51	-0.5
3,341,631	-		IAI47_15825	0.51	-0.5
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3,341,670	+		IAI47_15825	0.54	-1.7
3,341,670	+		IAI47_15825	0.54	-2.6
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