Strain Fitness in Pantoea sp. MT58 around IAI47_10455

Experiment: Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_10445 and IAI47_10450 overlap by 1 nucleotidesIAI47_10450 and IAI47_10455 overlap by 8 nucleotidesIAI47_10455 and IAI47_10460 are separated by 0 nucleotides IAI47_10445: IAI47_10445 - electron transport complex subunit RsxA, at 2,213,848 to 2,214,429 _10445 IAI47_10450: IAI47_10450 - electron transport complex subunit RsxB, at 2,214,429 to 2,215,007 _10450 IAI47_10455: IAI47_10455 - electron transport complex subunit RsxC, at 2,215,000 to 2,217,843 _10455 IAI47_10460: IAI47_10460 - electron transport complex subunit RsxD, at 2,217,844 to 2,218,902 _10460 Position (kb) 2214 2215 2216 2217 2218Strain fitness (log2 ratio) -1 0 1 2at 2214.965 kb on + strandat 2214.995 kb on + strandat 2214.995 kb on + strandat 2214.995 kb on + strandat 2214.995 kb on + strandat 2214.995 kb on + strandat 2214.995 kb on + strandat 2214.995 kb on + strandat 2214.995 kb on + strandat 2214.995 kb on + strandat 2214.995 kb on + strandat 2216.670 kb on + strand, within IAI47_10455at 2216.670 kb on + strand, within IAI47_10455at 2216.670 kb on + strand, within IAI47_10455at 2216.670 kb on + strand, within IAI47_10455at 2216.958 kb on + strand, within IAI47_10455at 2216.958 kb on + strand, within IAI47_10455at 2216.961 kb on + strand, within IAI47_10455at 2216.961 kb on + strand, within IAI47_10455at 2217.414 kb on + strand, within IAI47_10455at 2217.477 kb on + strand, within IAI47_10455at 2217.477 kb on + strand, within IAI47_10455at 2217.657 kb on + strandat 2217.657 kb on + strandat 2217.810 kb on + strandat 2217.825 kb on + strandat 2217.871 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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2,214,965 + +0.5
2,214,995 + +1.2
2,214,995 + +0.8
2,214,995 + +1.2
2,214,995 + +2.0
2,214,995 + +0.1
2,214,995 + +0.6
2,214,995 + +0.6
2,214,995 + +1.0
2,214,995 + +0.8
2,214,995 + +2.2
2,216,670 + IAI47_10455 0.59 +2.1
2,216,670 + IAI47_10455 0.59 -0.8
2,216,670 + IAI47_10455 0.59 +1.3
2,216,670 + IAI47_10455 0.59 +0.0
2,216,958 + IAI47_10455 0.69 +1.2
2,216,958 + IAI47_10455 0.69 +1.8
2,216,961 + IAI47_10455 0.69 +1.2
2,216,961 + IAI47_10455 0.69 -0.8
2,217,414 + IAI47_10455 0.85 -0.0
2,217,477 + IAI47_10455 0.87 -0.0
2,217,477 + IAI47_10455 0.87 +2.4
2,217,657 + +0.2
2,217,657 + +1.5
2,217,810 + +0.2
2,217,825 + +1.4
2,217,871 + +0.9

Or see this region's nucleotide sequence