Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS23355

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS23350 and HSERO_RS23355 are separated by 15 nucleotidesHSERO_RS23355 and HSERO_RS23360 are separated by 122 nucleotidesHSERO_RS23360 and HSERO_RS23365 overlap by 8 nucleotides HSERO_RS23350: HSERO_RS23350 - glycosylase, at 5,359,714 to 5,360,997 _RS23350 HSERO_RS23355: HSERO_RS23355 - hypothetical protein, at 5,361,013 to 5,361,381 _RS23355 HSERO_RS23360: HSERO_RS23360 - phosphoheptose isomerase, at 5,361,504 to 5,362,100 _RS23360 HSERO_RS23365: HSERO_RS23365 - transporter, at 5,362,093 to 5,362,752 _RS23365 Position (kb) 5361 5362Strain fitness (log2 ratio) -2 -1 0 1at 5360.083 kb on - strand, within HSERO_RS23350at 5360.140 kb on + strand, within HSERO_RS23350at 5360.583 kb on + strand, within HSERO_RS23350at 5360.670 kb on + strand, within HSERO_RS23350at 5360.676 kb on + strand, within HSERO_RS23350at 5360.804 kb on + strand, within HSERO_RS23350at 5360.810 kb on - strand, within HSERO_RS23350at 5360.812 kb on - strand, within HSERO_RS23350at 5360.814 kb on + strand, within HSERO_RS23350at 5360.984 kb on - strandat 5361.026 kb on - strandat 5361.184 kb on - strand, within HSERO_RS23355at 5361.222 kb on - strand, within HSERO_RS23355

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 5 mM
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5,360,083 - HSERO_RS23350 0.29 +0.1
5,360,140 + HSERO_RS23350 0.33 +0.7
5,360,583 + HSERO_RS23350 0.68 -0.7
5,360,670 + HSERO_RS23350 0.74 +0.1
5,360,676 + HSERO_RS23350 0.75 -0.1
5,360,804 + HSERO_RS23350 0.85 -1.0
5,360,810 - HSERO_RS23350 0.85 -2.6
5,360,812 - HSERO_RS23350 0.86 +0.5
5,360,814 + HSERO_RS23350 0.86 -0.2
5,360,984 - -0.6
5,361,026 - +0.1
5,361,184 - HSERO_RS23355 0.46 +0.3
5,361,222 - HSERO_RS23355 0.57 +0.2

Or see this region's nucleotide sequence