Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23150 and HSERO_RS23155 are separated by 117 nucleotides HSERO_RS23155 and HSERO_RS23160 are separated by 61 nucleotides HSERO_RS23160 and HSERO_RS23165 are separated by 66 nucleotides
HSERO_RS23150: HSERO_RS23150 - AraC family transcriptional regulator, at 5,312,517 to 5,313,458
_RS23150
HSERO_RS23155: HSERO_RS23155 - AraC family transcriptional regulator, at 5,313,576 to 5,314,388
_RS23155
HSERO_RS23160: HSERO_RS23160 - short-chain dehydrogenase, at 5,314,450 to 5,315,208
_RS23160
HSERO_RS23165: HSERO_RS23165 - MFS transporter, at 5,315,275 to 5,316,486
_RS23165
Position (kb) 5313
5314
5315 Strain fitness (log2 ratio) -1
0
1 at 5312.708 kb on - strand, within HSERO_RS23150 at 5312.819 kb on - strand, within HSERO_RS23150 at 5313.062 kb on + strand, within HSERO_RS23150 at 5313.087 kb on + strand, within HSERO_RS23150 at 5313.203 kb on + strand, within HSERO_RS23150 at 5313.534 kb on + strand at 5313.584 kb on + strand at 5313.610 kb on - strand at 5314.027 kb on + strand, within HSERO_RS23155 at 5314.132 kb on - strand, within HSERO_RS23155 at 5314.387 kb on + strand at 5314.423 kb on - strand at 5314.431 kb on - strand at 5314.523 kb on + strand at 5314.676 kb on + strand, within HSERO_RS23160 at 5314.711 kb on + strand, within HSERO_RS23160 at 5314.934 kb on - strand, within HSERO_RS23160 at 5314.934 kb on - strand, within HSERO_RS23160 at 5314.946 kb on + strand, within HSERO_RS23160 at 5314.954 kb on - strand, within HSERO_RS23160 at 5315.003 kb on + strand, within HSERO_RS23160 at 5315.160 kb on + strand at 5315.169 kb on + strand at 5315.201 kb on - strand at 5315.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 5 mM remove 5,312,708 - HSERO_RS23150 0.20 +0.5 5,312,819 - HSERO_RS23150 0.32 -0.1 5,313,062 + HSERO_RS23150 0.58 -0.2 5,313,087 + HSERO_RS23150 0.61 -0.0 5,313,203 + HSERO_RS23150 0.73 +0.7 5,313,534 + -0.9 5,313,584 + -0.6 5,313,610 - -1.5 5,314,027 + HSERO_RS23155 0.55 +1.1 5,314,132 - HSERO_RS23155 0.68 +0.9 5,314,387 + +1.1 5,314,423 - +0.6 5,314,431 - +0.5 5,314,523 + -0.2 5,314,676 + HSERO_RS23160 0.30 +0.2 5,314,711 + HSERO_RS23160 0.34 +0.9 5,314,934 - HSERO_RS23160 0.64 -0.2 5,314,934 - HSERO_RS23160 0.64 -0.5 5,314,946 + HSERO_RS23160 0.65 +0.8 5,314,954 - HSERO_RS23160 0.66 -0.6 5,315,003 + HSERO_RS23160 0.73 +0.3 5,315,160 + -0.4 5,315,169 + -0.4 5,315,201 - -0.1 5,315,329 - +0.3
Or see this region's nucleotide sequence