Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23015 and HSERO_RS23020 are separated by 83 nucleotides HSERO_RS23020 and HSERO_RS23025 are separated by 51 nucleotides HSERO_RS23025 and HSERO_RS23030 are separated by 58 nucleotides
HSERO_RS23015: HSERO_RS23015 - GntR family transcriptional regulator, at 5,280,182 to 5,280,904
_RS23015
HSERO_RS23020: HSERO_RS23020 - amino acid ABC transporter, at 5,280,988 to 5,281,791
_RS23020
HSERO_RS23025: HSERO_RS23025 - phosphate ABC transporter ATP-binding protein, at 5,281,843 to 5,282,562
_RS23025
HSERO_RS23030: HSERO_RS23030 - amino acid ABC transporter permease, at 5,282,621 to 5,283,274
_RS23030
Position (kb) 5280
5281
5282 Strain fitness (log2 ratio) -1
0
1
2
3 at 5280.138 kb on + strand at 5280.298 kb on - strand, within HSERO_RS23015 at 5280.358 kb on + strand, within HSERO_RS23015 at 5280.457 kb on - strand, within HSERO_RS23015 at 5280.501 kb on - strand, within HSERO_RS23015 at 5280.649 kb on + strand, within HSERO_RS23015 at 5280.657 kb on - strand, within HSERO_RS23015 at 5280.657 kb on - strand, within HSERO_RS23015 at 5280.716 kb on - strand, within HSERO_RS23015 at 5280.727 kb on + strand, within HSERO_RS23015 at 5281.003 kb on - strand at 5281.005 kb on - strand at 5281.054 kb on - strand at 5281.054 kb on - strand at 5281.137 kb on + strand, within HSERO_RS23020 at 5281.320 kb on + strand, within HSERO_RS23020 at 5281.373 kb on + strand, within HSERO_RS23020 at 5281.381 kb on - strand, within HSERO_RS23020 at 5281.444 kb on + strand, within HSERO_RS23020 at 5281.573 kb on - strand, within HSERO_RS23020 at 5281.614 kb on + strand, within HSERO_RS23020 at 5281.824 kb on + strand at 5281.945 kb on - strand, within HSERO_RS23025 at 5282.008 kb on - strand, within HSERO_RS23025 at 5282.079 kb on - strand, within HSERO_RS23025 at 5282.144 kb on - strand, within HSERO_RS23025 at 5282.147 kb on + strand, within HSERO_RS23025 at 5282.147 kb on + strand, within HSERO_RS23025 at 5282.155 kb on - strand, within HSERO_RS23025 at 5282.176 kb on - strand, within HSERO_RS23025 at 5282.200 kb on - strand, within HSERO_RS23025 at 5282.234 kb on - strand, within HSERO_RS23025 at 5282.236 kb on + strand, within HSERO_RS23025 at 5282.292 kb on - strand, within HSERO_RS23025 at 5282.303 kb on - strand, within HSERO_RS23025 at 5282.349 kb on + strand, within HSERO_RS23025 at 5282.352 kb on - strand, within HSERO_RS23025 at 5282.385 kb on + strand, within HSERO_RS23025 at 5282.416 kb on - strand, within HSERO_RS23025 at 5282.431 kb on - strand, within HSERO_RS23025 at 5282.431 kb on - strand, within HSERO_RS23025 at 5282.446 kb on + strand, within HSERO_RS23025 at 5282.634 kb on + strand at 5282.674 kb on + strand at 5282.676 kb on + strand at 5282.676 kb on + strand at 5282.684 kb on - strand at 5282.684 kb on - strand at 5282.692 kb on + strand, within HSERO_RS23030 at 5282.755 kb on + strand, within HSERO_RS23030
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 5 mM remove 5,280,138 + -0.5 5,280,298 - HSERO_RS23015 0.16 -0.3 5,280,358 + HSERO_RS23015 0.24 +0.9 5,280,457 - HSERO_RS23015 0.38 +0.2 5,280,501 - HSERO_RS23015 0.44 +0.5 5,280,649 + HSERO_RS23015 0.65 +0.4 5,280,657 - HSERO_RS23015 0.66 +0.4 5,280,657 - HSERO_RS23015 0.66 +0.4 5,280,716 - HSERO_RS23015 0.74 +0.8 5,280,727 + HSERO_RS23015 0.75 -0.1 5,281,003 - -0.1 5,281,005 - +0.2 5,281,054 - +0.4 5,281,054 - -0.1 5,281,137 + HSERO_RS23020 0.19 -0.1 5,281,320 + HSERO_RS23020 0.41 -0.1 5,281,373 + HSERO_RS23020 0.48 +0.0 5,281,381 - HSERO_RS23020 0.49 +3.3 5,281,444 + HSERO_RS23020 0.57 +0.0 5,281,573 - HSERO_RS23020 0.73 -0.6 5,281,614 + HSERO_RS23020 0.78 -1.2 5,281,824 + -0.0 5,281,945 - HSERO_RS23025 0.14 +0.3 5,282,008 - HSERO_RS23025 0.23 +0.1 5,282,079 - HSERO_RS23025 0.33 -0.9 5,282,144 - HSERO_RS23025 0.42 +0.4 5,282,147 + HSERO_RS23025 0.42 +0.2 5,282,147 + HSERO_RS23025 0.42 -0.1 5,282,155 - HSERO_RS23025 0.43 -0.5 5,282,176 - HSERO_RS23025 0.46 -0.7 5,282,200 - HSERO_RS23025 0.50 +1.6 5,282,234 - HSERO_RS23025 0.54 +0.3 5,282,236 + HSERO_RS23025 0.55 +0.4 5,282,292 - HSERO_RS23025 0.62 -0.9 5,282,303 - HSERO_RS23025 0.64 -1.0 5,282,349 + HSERO_RS23025 0.70 +0.9 5,282,352 - HSERO_RS23025 0.71 +0.0 5,282,385 + HSERO_RS23025 0.75 -0.7 5,282,416 - HSERO_RS23025 0.80 +1.3 5,282,431 - HSERO_RS23025 0.82 +0.4 5,282,431 - HSERO_RS23025 0.82 -0.7 5,282,446 + HSERO_RS23025 0.84 -0.2 5,282,634 + +0.6 5,282,674 + +0.1 5,282,676 + +1.0 5,282,676 + +0.8 5,282,684 - -0.3 5,282,684 - -0.0 5,282,692 + HSERO_RS23030 0.11 +1.9 5,282,755 + HSERO_RS23030 0.20 +0.4
Or see this region's nucleotide sequence