Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20150

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
4,625,227	-		HSERO_RS20145	0.18	-0.3
4,625,358	-		HSERO_RS20145	0.30	+0.6
4,625,376	+		HSERO_RS20145	0.31	-0.2
4,625,791	-		HSERO_RS20145	0.68	-1.1
4,625,791	-		HSERO_RS20145	0.68	-0.4
4,625,986	+		HSERO_RS20145	0.85	+2.0
4,626,035	-		HSERO_RS20145	0.90	-0.8
4,626,085	-				+0.0
4,626,207	+				+2.0
4,626,282	-				-1.2
4,626,378	+				-0.4
4,626,386	-				-1.7
4,626,517	+		HSERO_RS20150	0.12	+0.0
4,626,587	+		HSERO_RS20150	0.14	-0.3
4,626,635	-		HSERO_RS20150	0.16	+1.0
4,626,673	-		HSERO_RS20150	0.17	-0.3
4,626,768	-		HSERO_RS20150	0.21	+0.3
4,626,788	+		HSERO_RS20150	0.22	-0.3
4,626,817	+		HSERO_RS20150	0.23	+0.3
4,626,830	-		HSERO_RS20150	0.23	+1.6
4,626,870	+		HSERO_RS20150	0.25	+0.2
4,626,870	+		HSERO_RS20150	0.25	-0.3
4,626,878	-		HSERO_RS20150	0.25	-1.5
4,626,878	-		HSERO_RS20150	0.25	+0.4
4,626,919	-		HSERO_RS20150	0.27	+0.0
4,626,940	+		HSERO_RS20150	0.27	-0.4
4,626,948	-		HSERO_RS20150	0.28	-0.0
4,626,968	-		HSERO_RS20150	0.29	+0.8
4,627,015	+				+2.0
4,627,042	-		HSERO_RS20150	0.31	-0.4
4,627,122	+		HSERO_RS20150	0.34	+0.1
4,627,256	+		HSERO_RS20150	0.39	-0.3
4,627,370	+		HSERO_RS20150	0.44	-0.1
4,627,617	-		HSERO_RS20150	0.53	+0.5
4,627,741	+		HSERO_RS20150	0.57	-0.1
4,627,746	+		HSERO_RS20150	0.58	-1.0
4,627,746	+		HSERO_RS20150	0.58	+0.8
4,627,847	-		HSERO_RS20150	0.61	-0.6
4,627,988	-		HSERO_RS20150	0.67	+0.5
4,628,056	+		HSERO_RS20150	0.69	+1.4
4,628,064	-		HSERO_RS20150	0.70	-0.2
4,628,085	+		HSERO_RS20150	0.70	+1.0
4,628,298	+		HSERO_RS20150	0.78	-0.1
4,628,300	-		HSERO_RS20150	0.78	-1.1
4,628,539	+		HSERO_RS20150	0.87	-0.4
4,628,618	+				-0.8
4,628,618	+				+0.0
4,628,801	+				-0.7
4,628,870	+				-0.7
4,628,982	-				-0.1
4,629,050	+				+0.0
4,629,050	+				+0.6
4,629,063	-		HSERO_RS20155	0.11	+0.2
4,629,109	+		HSERO_RS20155	0.15	+0.7
4,629,140	+		HSERO_RS20155	0.18	-0.2
4,629,320	-		HSERO_RS20155	0.34	-1.7
4,629,345	-		HSERO_RS20155	0.36	+2.3
4,629,391	+		HSERO_RS20155	0.41	+0.2
4,629,410	+		HSERO_RS20155	0.42	-0.8
4,629,501	+		HSERO_RS20155	0.51	+0.1
4,629,601	-		HSERO_RS20155	0.60	+0.1
4,629,767	+		HSERO_RS20155	0.75	+1.7
4,629,800	+		HSERO_RS20155	0.78	+1.0
4,629,802	+		HSERO_RS20155	0.78	-0.2