Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15260

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
3,461,352	-				+0.5
3,461,508	-		HSERO_RS15255	0.16	-1.0
3,461,543	-		HSERO_RS15255	0.20	-0.1
3,461,566	+		HSERO_RS15255	0.23	-0.8
3,461,827	-		HSERO_RS15255	0.54	-1.3
3,461,849	+		HSERO_RS15255	0.56	-0.0
3,462,021	+		HSERO_RS15255	0.77	-0.2
3,462,268	+				+0.5
3,462,320	+				-0.9
3,462,370	+				+0.5
3,462,378	-				+0.2
3,462,412	-				+0.0
3,462,415	-				+0.1
3,462,423	+				-0.6
3,462,428	+				-0.7
3,462,436	-				+0.1
3,462,614	+				+1.2
3,462,740	-				+0.4
3,462,785	+				+0.1
3,462,897	-				+0.1
3,462,945	+				+0.5
3,463,040	+				-1.1
3,463,134	+				-0.8
3,463,305	-				+1.7
3,463,443	-				-0.1
3,463,486	+				-0.1
3,463,520	+				-0.3
3,463,711	+				-0.9
3,463,772	-				-0.6
3,463,851	-				+0.1
3,463,910	+				-0.5
3,463,928	-				+0.9
3,463,979	-				+0.2
3,463,979	-				+0.0
3,464,215	+		HSERO_RS15260	0.11	+0.7
3,464,233	-		HSERO_RS15260	0.11	+0.9
3,464,233	-		HSERO_RS15260	0.11	-0.5
3,464,336	-		HSERO_RS15260	0.11	-0.3
3,464,443	-		HSERO_RS15260	0.12	+0.4
3,464,464	-		HSERO_RS15260	0.12	-0.0
3,464,476	-		HSERO_RS15260	0.12	+1.1
3,464,495	+		HSERO_RS15260	0.12	-0.1
3,464,557	-		HSERO_RS15260	0.12	+1.5
3,464,614	-		HSERO_RS15260	0.13	+0.2
3,464,814	-		HSERO_RS15260	0.14	-0.1
3,464,885	+		HSERO_RS15260	0.14	-0.6
3,465,063	-				-0.5
3,465,073	+		HSERO_RS15260	0.15	-0.3
3,465,170	+		HSERO_RS15260	0.16	-1.3
3,465,178	-		HSERO_RS15260	0.16	+0.4
3,465,320	+		HSERO_RS15260	0.17	+0.7
3,465,672	+		HSERO_RS15260	0.19	+2.6
3,465,852	-		HSERO_RS15260	0.20	+2.6
3,465,921	-		HSERO_RS15260	0.20	+4.3
3,466,171	-		HSERO_RS15260	0.22	-0.0
3,466,305	+		HSERO_RS15260	0.22	+0.9
3,466,305	+		HSERO_RS15260	0.22	-0.1
3,466,327	+		HSERO_RS15260	0.22	-0.1
3,466,353	+		HSERO_RS15260	0.23	-0.9
3,466,353	+		HSERO_RS15260	0.23	+1.3
3,466,371	-		HSERO_RS15260	0.23	+0.5
3,466,371	-		HSERO_RS15260	0.23	+0.3
3,466,371	-		HSERO_RS15260	0.23	-0.5
3,466,520	-		HSERO_RS15260	0.24	+0.2
3,466,631	+		HSERO_RS15260	0.24	-0.2
3,466,711	+				+2.9
3,466,711	+				-1.3
3,466,711	+		HSERO_RS15260	0.25	+0.1
3,466,719	-		HSERO_RS15260	0.25	+0.5
3,466,778	+		HSERO_RS15260	0.25	+0.6
3,467,230	-		HSERO_RS15260	0.28	+0.7
3,467,325	-		HSERO_RS15260	0.28	+1.3
3,467,495	-		HSERO_RS15260	0.29	+1.1
3,467,584	-		HSERO_RS15260	0.30	+0.4
3,467,752	+		HSERO_RS15260	0.30	+0.1
3,468,205	-				-1.1
3,468,289	+		HSERO_RS15260	0.33	-0.0
3,468,302	-		HSERO_RS15260	0.34	-0.2
3,468,307	-		HSERO_RS15260	0.34	+0.6
3,468,346	-		HSERO_RS15260	0.34	+0.1
3,468,539	+		HSERO_RS15260	0.35	+0.3
3,468,609	+		HSERO_RS15260	0.35	-1.4
3,468,624	-		HSERO_RS15260	0.35	+0.1
3,468,949	+				+1.3
3,468,975	+		HSERO_RS15260	0.37	+0.1
3,469,034	+		HSERO_RS15260	0.38	-0.6
3,469,042	-		HSERO_RS15260	0.38	-0.1
3,469,104	-		HSERO_RS15260	0.38	+0.4
3,469,111	-		HSERO_RS15260	0.38	+0.2
3,469,119	-				+1.5
3,469,237	-		HSERO_RS15260	0.39	+0.5
3,469,404	+		HSERO_RS15260	0.40	+0.2
3,469,404	+		HSERO_RS15260	0.40	+1.5
3,469,579	+		HSERO_RS15260	0.41	+0.4
3,469,631	+		HSERO_RS15260	0.41	+0.4
3,469,715	-		HSERO_RS15260	0.42	+0.0
3,469,726	+		HSERO_RS15260	0.42	+0.0
3,469,832	-		HSERO_RS15260	0.42	+0.2
3,469,874	+		HSERO_RS15260	0.42	+0.2
3,469,877	-		HSERO_RS15260	0.42	-0.2
3,469,974	+		HSERO_RS15260	0.43	-0.1
3,470,273	-		HSERO_RS15260	0.45	+0.6
3,470,375	-		HSERO_RS15260	0.45	-1.8
3,470,414	-		HSERO_RS15260	0.45	+0.1
3,470,447	+		HSERO_RS15260	0.46	-2.0
3,470,508	+		HSERO_RS15260	0.46	+0.4
3,470,583	+		HSERO_RS15260	0.46	+0.3
3,470,621	-		HSERO_RS15260	0.47	+0.1
3,470,659	+		HSERO_RS15260	0.47	-1.2
3,470,721	+		HSERO_RS15260	0.47	-1.7
3,470,743	+		HSERO_RS15260	0.47	-0.2
3,470,746	-		HSERO_RS15260	0.47	-0.5
3,470,748	+		HSERO_RS15260	0.47	-0.1
3,470,826	-		HSERO_RS15260	0.48	+0.7
3,470,890	+		HSERO_RS15260	0.48	-1.3
3,471,018	-		HSERO_RS15260	0.49	-0.1
3,471,084	-		HSERO_RS15260	0.49	+0.0
3,471,124	-		HSERO_RS15260	0.49	+0.1
3,471,136	+		HSERO_RS15260	0.50	+0.0
3,471,234	+		HSERO_RS15260	0.50	-0.3
3,471,243	-		HSERO_RS15260	0.50	+0.3
3,471,343	-		HSERO_RS15260	0.51	+1.5
3,471,617	+		HSERO_RS15260	0.52	-0.6
3,471,625	-		HSERO_RS15260	0.52	+0.5
3,471,625	-		HSERO_RS15260	0.52	+0.3
3,471,625	-		HSERO_RS15260	0.52	+0.0
3,471,641	+		HSERO_RS15260	0.52	+0.1
3,471,728	-		HSERO_RS15260	0.53	+0.3
3,471,862	+		HSERO_RS15260	0.54	-0.1
3,472,010	+		HSERO_RS15260	0.54	+1.1
3,472,013	-		HSERO_RS15260	0.54	-0.2
3,472,495	+		HSERO_RS15260	0.57	-0.3
3,472,506	+		HSERO_RS15260	0.57	-0.9
3,472,566	+		HSERO_RS15260	0.58	+0.2
3,472,588	-		HSERO_RS15260	0.58	+0.4
3,472,759	+		HSERO_RS15260	0.59	-0.1
3,472,781	+		HSERO_RS15260	0.59	+0.4
3,472,789	-		HSERO_RS15260	0.59	-0.3
3,472,789	-		HSERO_RS15260	0.59	-0.4
3,472,958	+		HSERO_RS15260	0.60	-1.3
3,473,030	-		HSERO_RS15260	0.60	+0.0
3,473,056	-		HSERO_RS15260	0.60	-0.1
3,473,171	+		HSERO_RS15260	0.61	+0.8
3,473,229	-		HSERO_RS15260	0.61	-0.1
3,473,345	+		HSERO_RS15260	0.62	-1.2
3,473,586	+		HSERO_RS15260	0.63	+2.7
3,473,599	-		HSERO_RS15260	0.63	-1.0
3,473,620	+		HSERO_RS15260	0.64	+0.8
3,473,763	+		HSERO_RS15260	0.64	+1.3
3,473,764	+		HSERO_RS15260	0.64	+0.3
3,473,792	+		HSERO_RS15260	0.65	-0.4
3,473,878	+		HSERO_RS15260	0.65	-0.9
3,474,039	-		HSERO_RS15260	0.66	+0.3
3,474,258	+		HSERO_RS15260	0.67	-0.5
3,474,375	-		HSERO_RS15260	0.68	-0.2
3,474,412	-		HSERO_RS15260	0.68	-0.7
3,474,497	+		HSERO_RS15260	0.68	+0.1
3,474,527	-		HSERO_RS15260	0.69	-0.4
3,474,646	+		HSERO_RS15260	0.69	-0.7
3,474,728	-		HSERO_RS15260	0.70	+0.3
3,474,755	+		HSERO_RS15260	0.70	-0.1
3,474,858	+		HSERO_RS15260	0.71	+0.6
3,474,936	+		HSERO_RS15260	0.71	-0.3
3,474,944	-		HSERO_RS15260	0.71	-0.1
3,474,987	-		HSERO_RS15260	0.71	-0.3
3,475,017	-		HSERO_RS15260	0.71	+0.6
3,475,052	-		HSERO_RS15260	0.72	+1.1
3,475,144	-		HSERO_RS15260	0.72	+0.6
3,475,410	-		HSERO_RS15260	0.74	+0.6
3,475,475	+		HSERO_RS15260	0.74	+0.9
3,475,527	+		HSERO_RS15260	0.74	+0.2
3,475,663	-		HSERO_RS15260	0.75	-0.6
3,475,900	-		HSERO_RS15260	0.76	-0.1
3,475,917	+		HSERO_RS15260	0.76	-0.5
3,476,061	-		HSERO_RS15260	0.77	+1.2
3,476,083	+		HSERO_RS15260	0.77	+0.3
3,476,091	-		HSERO_RS15260	0.77	-0.2
3,476,523	+		HSERO_RS15260	0.80	+0.1
3,476,523	+		HSERO_RS15260	0.80	+0.1
3,476,542	-		HSERO_RS15260	0.80	+0.7
3,476,582	-		HSERO_RS15260	0.80	-0.1
3,476,627	-		HSERO_RS15260	0.80	-0.9
3,476,692	+		HSERO_RS15260	0.81	-0.9
3,476,743	-		HSERO_RS15260	0.81	-0.2
3,476,781	+		HSERO_RS15260	0.81	+0.1
3,476,878	+		HSERO_RS15260	0.82	+0.6
3,476,878	+		HSERO_RS15260	0.82	-1.3
3,476,886	-		HSERO_RS15260	0.82	-0.2
3,476,947	+		HSERO_RS15260	0.82	+0.1
3,477,541	+		HSERO_RS15260	0.86	-0.1
3,477,637	+		HSERO_RS15260	0.86	-0.4
3,477,650	-		HSERO_RS15260	0.86	-0.6
3,477,750	-		HSERO_RS15260	0.87	+0.4
3,477,945	-		HSERO_RS15260	0.88	+0.3
3,477,973	+		HSERO_RS15260	0.88	-0.5
3,478,034	-		HSERO_RS15260	0.88	-0.2
3,478,083	-		HSERO_RS15260	0.89	+0.7
3,478,216	-		HSERO_RS15260	0.89	+1.5
3,478,351	-				+0.9
3,478,425	-				+0.3
3,478,483	+				+0.3
3,478,608	+				+0.7
3,478,941	-				+1.6
3,478,946	-				-0.5
3,479,095	+				-0.7
3,479,396	+				+0.3
3,479,491	-				+0.6
3,479,824	-				-0.1
3,479,911	+				+0.1
3,480,045	+				+0.5
3,480,252	+				-0.3
3,480,314	-				+0.0
3,480,406	+				+0.0
3,480,465	+				-0.6
3,480,552	-				+0.1
3,480,567	-				-0.4
3,480,603	+				+0.2
3,480,611	-				+0.2
3,480,617	+				+1.9
3,480,718	+				+0.6
3,480,769	-				+0.4
3,480,823	-				-0.1
3,480,831	+				+0.7
3,480,834	-				-0.4
3,480,877	+				-1.3
3,480,912	-				+0.0
3,480,934	+				+0.2
3,480,942	-				+1.3
3,481,032	-				+0.0