Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12580

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
2,868,127	-				+2.0
2,868,203	+				-0.1
2,868,203	+				+0.5
2,868,229	-				-0.5
2,868,430	+		HSERO_RS12575	0.21	+0.1
2,868,492	-		HSERO_RS12575	0.29	+0.0
2,868,640	+		HSERO_RS12575	0.46	-1.6
2,868,843	+				-0.6
2,868,874	-		HSERO_RS12575	0.73	+0.6
2,869,002	+		HSERO_RS12575	0.87	+0.0
2,869,259	+		HSERO_RS12580	0.11	+0.1
2,869,267	-		HSERO_RS12580	0.11	-0.5
2,869,326	+		HSERO_RS12580	0.15	-1.1
2,869,330	+		HSERO_RS12580	0.16	-0.3
2,870,124	+		HSERO_RS12580	0.72	+0.4
2,870,272	-		HSERO_RS12580	0.83	+0.5
2,870,292	+		HSERO_RS12580	0.84	-0.2
2,870,342	-		HSERO_RS12580	0.88	-0.5
2,870,405	+				-0.7
2,870,504	+				+0.6
2,870,719	-				-0.7
2,870,907	+		HSERO_RS12585	0.23	+0.9
2,870,915	-		HSERO_RS12585	0.24	-0.4
2,870,915	-		HSERO_RS12585	0.24	-0.3
2,870,957	-		HSERO_RS12585	0.27	+1.1
2,871,045	+		HSERO_RS12585	0.34	-0.1
2,871,230	-		HSERO_RS12585	0.48	+0.4
2,871,343	-		HSERO_RS12585	0.56	+0.5
2,871,437	-		HSERO_RS12585	0.63	+0.1