Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04705

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
1,026,929	+		HSERO_RS04700	0.67	+0.4
1,026,939	+		HSERO_RS04700	0.67	+0.6
1,026,981	-		HSERO_RS04700	0.70	+0.3
1,027,041	-		HSERO_RS04700	0.73	-1.1
1,027,375	+				+0.2
1,027,515	+				-0.4
1,027,515	+				+1.1
1,027,523	-				+0.7
1,027,523	-				+0.2
1,027,523	-				+0.1
1,027,705	+				+0.1
1,027,802	-				+0.1
1,027,804	-				-0.5
1,027,804	-				-0.2
1,028,005	+		HSERO_RS04705	0.27	+0.2
1,028,051	-		HSERO_RS04705	0.33	-0.3
1,028,148	+		HSERO_RS04705	0.45	+0.8
1,028,222	+		HSERO_RS04705	0.54	+1.0
1,028,225	-		HSERO_RS04705	0.54	+0.1
1,028,504	+		HSERO_RS04705	0.89	+0.9
1,028,695	+				+0.7
1,028,788	+				+0.2
1,028,796	-				+0.5
1,028,829	+				-0.4
1,028,844	-				-0.8
1,028,864	-				-0.9
1,029,300	-		HSERO_RS04710	0.11	-0.9
1,029,449	+		HSERO_RS04710	0.17	-0.0
1,029,461	+		HSERO_RS04710	0.18	-0.8
1,029,541	+		HSERO_RS04710	0.21	+0.9