Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04190 and HSERO_RS04195 are separated by 117 nucleotides HSERO_RS04195 and HSERO_RS04200 are separated by 447 nucleotides
HSERO_RS04190: HSERO_RS04190 - DNA mismatch repair protein, at 916,548 to 918,473
_RS04190
HSERO_RS04195: HSERO_RS04195 - methyl-accepting chemotaxis protein, at 918,591 to 920,564
_RS04195
HSERO_RS04200: HSERO_RS04200 - diguanylate cyclase, at 921,012 to 923,954
_RS04200
Position (kb) 918
919
920
921 Strain fitness (log2 ratio) -1
0
1
2
3 at 917.671 kb on + strand, within HSERO_RS04190 at 917.929 kb on - strand, within HSERO_RS04190 at 917.934 kb on - strand, within HSERO_RS04190 at 917.934 kb on - strand at 918.092 kb on - strand, within HSERO_RS04190 at 918.273 kb on + strand, within HSERO_RS04190 at 918.302 kb on - strand at 918.342 kb on - strand at 918.478 kb on + strand at 918.478 kb on + strand at 918.614 kb on - strand at 918.685 kb on - strand at 919.118 kb on + strand, within HSERO_RS04195 at 919.150 kb on + strand, within HSERO_RS04195 at 919.180 kb on - strand, within HSERO_RS04195 at 919.214 kb on - strand, within HSERO_RS04195 at 919.274 kb on + strand, within HSERO_RS04195 at 919.339 kb on + strand, within HSERO_RS04195 at 919.392 kb on - strand, within HSERO_RS04195 at 919.403 kb on + strand, within HSERO_RS04195 at 919.411 kb on - strand, within HSERO_RS04195 at 919.884 kb on - strand, within HSERO_RS04195 at 919.885 kb on - strand, within HSERO_RS04195 at 920.286 kb on - strand, within HSERO_RS04195 at 920.329 kb on + strand, within HSERO_RS04195 at 920.357 kb on - strand at 920.407 kb on - strand at 920.535 kb on + strand at 920.536 kb on - strand at 920.630 kb on - strand at 920.753 kb on - strand at 920.907 kb on + strand at 920.917 kb on + strand at 921.053 kb on - strand at 921.077 kb on + strand at 921.180 kb on + strand at 921.201 kb on + strand at 921.209 kb on - strand at 921.278 kb on - strand at 921.485 kb on + strand, within HSERO_RS04200 at 921.536 kb on + strand, within HSERO_RS04200
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 5 mM remove 917,671 + HSERO_RS04190 0.58 +0.3 917,929 - HSERO_RS04190 0.72 -0.7 917,934 - HSERO_RS04190 0.72 +2.4 917,934 - +1.0 918,092 - HSERO_RS04190 0.80 +2.0 918,273 + HSERO_RS04190 0.90 -0.3 918,302 - +0.2 918,342 - -0.9 918,478 + +1.0 918,478 + +0.6 918,614 - +0.5 918,685 - +0.4 919,118 + HSERO_RS04195 0.27 +1.3 919,150 + HSERO_RS04195 0.28 -0.6 919,180 - HSERO_RS04195 0.30 +0.1 919,214 - HSERO_RS04195 0.32 +0.6 919,274 + HSERO_RS04195 0.35 +0.0 919,339 + HSERO_RS04195 0.38 +0.5 919,392 - HSERO_RS04195 0.41 +0.3 919,403 + HSERO_RS04195 0.41 +1.4 919,411 - HSERO_RS04195 0.42 +0.2 919,884 - HSERO_RS04195 0.66 +0.9 919,885 - HSERO_RS04195 0.66 +0.4 920,286 - HSERO_RS04195 0.86 -0.2 920,329 + HSERO_RS04195 0.88 +3.0 920,357 - +0.4 920,407 - +0.3 920,535 + -1.4 920,536 - +0.3 920,630 - +0.2 920,753 - +0.4 920,907 + +0.1 920,917 + -0.6 921,053 - -0.4 921,077 + +0.2 921,180 + +0.2 921,201 + +0.4 921,209 - +0.3 921,278 - -0.3 921,485 + HSERO_RS04200 0.16 -0.4 921,536 + HSERO_RS04200 0.18 +0.5
Or see this region's nucleotide sequence