Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03945

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS03940 and HSERO_RS03945 are separated by 149 nucleotidesHSERO_RS03945 and HSERO_RS03950 are separated by 93 nucleotides HSERO_RS03940: HSERO_RS03940 - hypothetical protein, at 867,372 to 868,112 _RS03940 HSERO_RS03945: HSERO_RS03945 - hypothetical protein, at 868,262 to 868,645 _RS03945 HSERO_RS03950: HSERO_RS03950 - type III secretion HrpQ protein, at 868,739 to 869,773 _RS03950 Position (kb) 868 869Strain fitness (log2 ratio) -1 0 1at 867.264 kb on - strandat 867.264 kb on - strandat 867.322 kb on - strandat 867.412 kb on - strandat 867.551 kb on + strand, within HSERO_RS03940at 867.668 kb on + strand, within HSERO_RS03940at 867.894 kb on + strand, within HSERO_RS03940at 867.914 kb on - strand, within HSERO_RS03940at 868.066 kb on + strandat 868.072 kb on - strandat 868.099 kb on - strandat 868.106 kb on + strandat 868.737 kb on - strandat 868.836 kb on + strandat 868.849 kb on - strand, within HSERO_RS03950at 868.870 kb on + strand, within HSERO_RS03950at 868.905 kb on - strand, within HSERO_RS03950at 869.145 kb on + strand, within HSERO_RS03950at 869.551 kb on + strand, within HSERO_RS03950at 869.551 kb on + strand, within HSERO_RS03950

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 5 mM
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867,264 - -0.2
867,264 - +0.0
867,322 - +0.3
867,412 - -0.4
867,551 + HSERO_RS03940 0.24 +0.8
867,668 + HSERO_RS03940 0.40 +0.0
867,894 + HSERO_RS03940 0.70 -1.5
867,914 - HSERO_RS03940 0.73 -0.1
868,066 + +0.7
868,072 - -1.2
868,099 - -0.2
868,106 + -0.8
868,737 - +1.0
868,836 + +0.4
868,849 - HSERO_RS03950 0.11 +1.5
868,870 + HSERO_RS03950 0.13 -0.2
868,905 - HSERO_RS03950 0.16 -1.0
869,145 + HSERO_RS03950 0.39 -0.1
869,551 + HSERO_RS03950 0.78 +0.3
869,551 + HSERO_RS03950 0.78 +0.4

Or see this region's nucleotide sequence